Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   PH204_RS05165 Genome accession   NZ_CP122953
Coordinates   1097407..1097811 (-) Length   134 a.a.
NCBI ID   WP_286446662.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1092407..1102811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH204_RS05140 (PH204_05140) recJ 1092871..1094421 (+) 1551 WP_286446656.1 single-stranded-DNA-specific exonuclease RecJ -
  PH204_RS05145 (PH204_05145) - 1094421..1095302 (+) 882 WP_286446657.1 RluA family pseudouridine synthase -
  PH204_RS05150 (PH204_05150) - 1095385..1095951 (-) 567 WP_286446658.1 hypothetical protein -
  PH204_RS05155 (PH204_05155) - 1095935..1096240 (-) 306 WP_100979727.1 hypothetical protein -
  PH204_RS07765 - 1096427..1096897 (-) 471 WP_350310572.1 tetratricopeptide repeat protein -
  PH204_RS07770 - 1096860..1097006 (-) 147 WP_350310573.1 SEL1-like repeat protein -
  PH204_RS07775 - 1096969..1097274 (-) 306 WP_350310574.1 hypothetical protein -
  PH204_RS05165 (PH204_05165) dprB 1097407..1097811 (-) 405 WP_286446662.1 Holliday junction resolvase RuvX Machinery gene
  PH204_RS05170 (PH204_05170) dprA 1097808..1098608 (-) 801 WP_286446664.1 DNA-processing protein DprA Machinery gene
  PH204_RS05175 (PH204_05175) minE 1098615..1098848 (-) 234 WP_053575872.1 cell division topological specificity factor MinE -
  PH204_RS05180 (PH204_05180) minD 1098845..1099651 (-) 807 WP_286446667.1 septum site-determining protein MinD -
  PH204_RS05185 (PH204_05185) ilvC 1099675..1100667 (-) 993 WP_286446669.1 ketol-acid reductoisomerase -
  PH204_RS05195 (PH204_05195) - 1100916..1101698 (+) 783 WP_286446671.1 NAD+ synthase -
  PH204_RS05200 (PH204_05200) - 1101695..1102633 (+) 939 WP_286446672.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15372.96 Da        Isoelectric Point: 9.8533

>NTDB_id=817423 PH204_RS05165 WP_286446662.1 1097407..1097811(-) (dprB) [Helicobacter pylori strain BS30]
MILACDVGLKRIGIAMLLNGVILPLEAILRRNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817423 PH204_RS05165 WP_286446662.1 1097407..1097811(-) (dprB) [Helicobacter pylori strain BS30]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATAGCCATGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCGCAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAACCCAATGAAAGCTATGCGGATACGAACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948