Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PH204_RS00275 Genome accession   NZ_CP122953
Coordinates   62749..63324 (+) Length   191 a.a.
NCBI ID   WP_286447316.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS30     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57749..68324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH204_RS00250 (PH204_00250) uvrD 58440..60485 (+) 2046 WP_286447857.1 DNA helicase UvrD -
  PH204_RS00255 (PH204_00255) flgA 60482..61138 (+) 657 WP_286447312.1 flagellar basal body P-ring formation chaperone FlgA -
  PH204_RS00260 (PH204_00260) - 61148..61711 (+) 564 WP_286447313.1 UbiX family flavin prenyltransferase -
  PH204_RS00265 (PH204_00265) coaD 61711..62184 (+) 474 WP_286447314.1 pantetheine-phosphate adenylyltransferase -
  PH204_RS00270 (PH204_00270) tmk 62186..62761 (+) 576 WP_286447315.1 dTMP kinase -
  PH204_RS00275 (PH204_00275) comFC 62749..63324 (+) 576 WP_286447316.1 ComF family protein Machinery gene
  PH204_RS00280 (PH204_00280) - 63357..65396 (+) 2040 WP_286447317.1 N-6 DNA methylase -
  PH204_RS00285 (PH204_00285) - 65393..66660 (+) 1268 Protein_55 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21293.86 Da        Isoelectric Point: 8.8864

>NTDB_id=817415 PH204_RS00275 WP_286447316.1 62749..63324(+) (comFC) [Helicobacter pylori strain BS30]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=817415 PH204_RS00275 WP_286447316.1 62749..63324(+) (comFC) [Helicobacter pylori strain BS30]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATATG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTATTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCTTGG
AATTTCGTGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361