Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QAP05_RS07655 Genome accession   NZ_CP122952
Coordinates   1590583..1591158 (-) Length   191 a.a.
NCBI ID   WP_286491246.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1585583..1596158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP05_RS07995 - 1587283..1588514 (-) 1232 Protein_1493 restriction endonuclease subunit S -
  QAP05_RS07650 (QAP05_07645) - 1588511..1590550 (-) 2040 WP_286491244.1 N-6 DNA methylase -
  QAP05_RS07655 (QAP05_07650) comFC 1590583..1591158 (-) 576 WP_286491246.1 ComF family protein Machinery gene
  QAP05_RS07660 (QAP05_07655) tmk 1591146..1591721 (-) 576 WP_286491248.1 dTMP kinase -
  QAP05_RS07665 (QAP05_07660) coaD 1591723..1592196 (-) 474 WP_286491249.1 pantetheine-phosphate adenylyltransferase -
  QAP05_RS07670 (QAP05_07665) - 1592196..1592759 (-) 564 WP_000780105.1 UbiX family flavin prenyltransferase -
  QAP05_RS07675 (QAP05_07670) flgA 1592769..1593425 (-) 657 WP_286491250.1 flagellar basal body P-ring formation chaperone FlgA -
  QAP05_RS07680 (QAP05_07675) uvrD 1593422..1595467 (-) 2046 WP_286491252.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21390.00 Da        Isoelectric Point: 9.4519

>NTDB_id=817412 QAP05_RS07655 WP_286491246.1 1590583..1591158(-) (comFC) [Helicobacter pylori strain BS27-1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRNFTFKGDKNLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=817412 QAP05_RS07655 WP_286491246.1 1590583..1591158(-) (comFC) [Helicobacter pylori strain BS27-1]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAGAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCCCACTTTGCGATTGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.241

100

0.942
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366