Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAP05_RS05525 Genome accession   NZ_CP122952
Coordinates   1151079..1151483 (-) Length   134 a.a.
NCBI ID   WP_286490975.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1146079..1156483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP05_RS05500 (QAP05_05500) recJ 1146849..1148399 (+) 1551 WP_286490970.1 single-stranded-DNA-specific exonuclease RecJ -
  QAP05_RS05505 (QAP05_05505) - 1148399..1149280 (+) 882 WP_286490971.1 RluA family pseudouridine synthase -
  QAP05_RS05510 (QAP05_05510) - 1149368..1149928 (-) 561 WP_286490972.1 hypothetical protein -
  QAP05_RS05515 (QAP05_05515) - 1149912..1150250 (-) 339 WP_286490973.1 hypothetical protein -
  QAP05_RS05520 (QAP05_05520) - 1150436..1150795 (-) 360 WP_286490974.1 tetratricopeptide repeat protein -
  QAP05_RS05525 (QAP05_05525) dprB 1151079..1151483 (-) 405 WP_286490975.1 Holliday junction resolvase RuvX Machinery gene
  QAP05_RS05530 (QAP05_05530) dprA 1151480..1152280 (-) 801 WP_286490976.1 DNA-processing protein DprA Machinery gene
  QAP05_RS05535 (QAP05_05535) minE 1152294..1152527 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  QAP05_RS05540 (QAP05_05540) minD 1152524..1153330 (-) 807 WP_286490977.1 septum site-determining protein MinD -
  QAP05_RS05545 (QAP05_05545) ilvC 1153354..1154346 (-) 993 WP_286490978.1 ketol-acid reductoisomerase -
  QAP05_RS05555 (QAP05_05555) - 1154595..1155377 (+) 783 WP_286490979.1 NAD+ synthase -
  QAP05_RS05560 (QAP05_05560) - 1155374..1156312 (+) 939 WP_286490980.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15231.73 Da        Isoelectric Point: 9.5501

>NTDB_id=817400 QAP05_RS05525 WP_286490975.1 1151079..1151483(-) (dprB) [Helicobacter pylori strain BS27-1]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNKSYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILEHYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817400 QAP05_RS05525 WP_286490975.1 1151079..1151483(-) (dprB) [Helicobacter pylori strain BS27-1]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTGCGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATAAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCACTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948