Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QAD59_RS00295 Genome accession   NZ_CP122951
Coordinates   65927..66502 (+) Length   191 a.a.
NCBI ID   WP_140446240.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS26     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 59078..72817 65927..66502 within 0


Gene organization within MGE regions


Location: 59078..72817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD59_RS00265 (QAD59_00265) - 59078..61618 (+) 2541 WP_279963408.1 tetratricopeptide repeat protein -
  QAD59_RS00270 (QAD59_00270) uvrD 61618..63663 (+) 2046 WP_194145729.1 DNA helicase UvrD -
  QAD59_RS00275 (QAD59_00275) flgA 63660..64316 (+) 657 WP_121278738.1 flagellar basal body P-ring formation chaperone FlgA -
  QAD59_RS00280 (QAD59_00280) - 64326..64889 (+) 564 WP_286490122.1 UbiX family flavin prenyltransferase -
  QAD59_RS00285 (QAD59_00285) coaD 64889..65362 (+) 474 WP_121278733.1 pantetheine-phosphate adenylyltransferase -
  QAD59_RS00290 (QAD59_00290) tmk 65364..65939 (+) 576 WP_140446239.1 dTMP kinase -
  QAD59_RS00295 (QAD59_00295) comFC 65927..66502 (+) 576 WP_140446240.1 ComF family protein Machinery gene
  QAD59_RS00300 (QAD59_00300) - 66535..66921 (+) 387 Protein_57 VRR-NUC domain-containing protein -
  QAD59_RS00305 (QAD59_00305) - 66908..67669 (-) 762 WP_001183567.1 Eco47II family restriction endonuclease -
  QAD59_RS00310 (QAD59_00310) dcm 67638..68669 (-) 1032 WP_127984433.1 DNA (cytosine-5-)-methyltransferase -
  QAD59_RS00315 (QAD59_00315) - 68677..69234 (+) 558 WP_286490123.1 restriction endonuclease subunit S -
  QAD59_RS00320 (QAD59_00320) polA 69300..71957 (+) 2658 WP_279963412.1 DNA polymerase I -
  QAD59_RS00325 (QAD59_00325) - 72071..72817 (+) 747 WP_212866116.1 outer membrane protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21396.94 Da        Isoelectric Point: 8.6728

>NTDB_id=817372 QAD59_RS00295 WP_140446240.1 65927..66502(+) (comFC) [Helicobacter pylori strain BS26]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=817372 QAD59_RS00295 WP_140446240.1 65927..66502(+) (comFC) [Helicobacter pylori strain BS26]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAGGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCACACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.859

100

0.969
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.788

100

0.372