Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAP01_RS05680 Genome accession   NZ_CP122950
Coordinates   1193881..1194285 (-) Length   134 a.a.
NCBI ID   WP_286497979.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS28-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188881..1199285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP01_RS05645 (QAP01_05645) - 1189643..1190428 (-) 786 WP_140573603.1 hypothetical protein -
  QAP01_RS05650 (QAP01_05650) - 1190428..1190809 (-) 382 Protein_1099 DUF1294 domain-containing protein -
  QAP01_RS05655 (QAP01_05655) - 1191103..1191528 (-) 426 WP_237016740.1 hypothetical protein -
  QAP01_RS05660 (QAP01_05660) - 1191632..1191763 (-) 132 WP_286497977.1 lysozyme -
  QAP01_RS05665 (QAP01_05665) - 1191793..1192359 (-) 567 WP_140521902.1 hypothetical protein -
  QAP01_RS05670 (QAP01_05670) - 1192343..1192648 (-) 306 WP_100975247.1 hypothetical protein -
  QAP01_RS05675 (QAP01_05675) - 1192776..1193651 (-) 876 WP_286497978.1 tetratricopeptide repeat protein -
  QAP01_RS05680 (QAP01_05680) dprB 1193881..1194285 (-) 405 WP_286497979.1 Holliday junction resolvase RuvX Machinery gene
  QAP01_RS05685 (QAP01_05685) dprA 1194282..1195082 (-) 801 WP_140512197.1 DNA-processing protein DprA Machinery gene
  QAP01_RS05690 (QAP01_05690) minE 1195089..1195322 (-) 234 WP_108349316.1 cell division topological specificity factor MinE -
  QAP01_RS05695 (QAP01_05695) minD 1195319..1196125 (-) 807 WP_286497980.1 septum site-determining protein MinD -
  QAP01_RS05700 (QAP01_05700) ilvC 1196149..1197141 (-) 993 WP_286497981.1 ketol-acid reductoisomerase -
  QAP01_RS05710 (QAP01_05710) - 1197390..1198172 (+) 783 WP_286497982.1 NAD+ synthase -
  QAP01_RS05715 (QAP01_05715) - 1198169..1199107 (+) 939 WP_286497983.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15192.69 Da        Isoelectric Point: 9.1199

>NTDB_id=817359 QAP01_RS05680 WP_286497979.1 1193881..1194285(-) (dprB) [Helicobacter pylori strain BS28-1]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEYLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817359 QAP01_RS05680 WP_286497979.1 1193881..1194285(-) (dprB) [Helicobacter pylori strain BS28-1]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTGCGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGTATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925