Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | QAP01_RS00275 | Genome accession | NZ_CP122950 |
| Coordinates | 61497..62072 (+) | Length | 191 a.a. |
| NCBI ID | WP_286498298.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS28-1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56497..67072
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAP01_RS00250 (QAP01_00250) | uvrD | 57188..59233 (+) | 2046 | WP_286498293.1 | DNA helicase UvrD | - |
| QAP01_RS00255 (QAP01_00255) | flgA | 59230..59886 (+) | 657 | WP_286498294.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| QAP01_RS00260 (QAP01_00260) | - | 59896..60459 (+) | 564 | WP_286498295.1 | UbiX family flavin prenyltransferase | - |
| QAP01_RS00265 (QAP01_00265) | coaD | 60459..60932 (+) | 474 | WP_033589676.1 | pantetheine-phosphate adenylyltransferase | - |
| QAP01_RS00270 (QAP01_00270) | tmk | 60934..61509 (+) | 576 | WP_286498296.1 | dTMP kinase | - |
| QAP01_RS00275 (QAP01_00275) | comFC | 61497..62072 (+) | 576 | WP_286498298.1 | ComF family protein | Machinery gene |
| QAP01_RS00280 (QAP01_00280) | - | 62105..64143 (+) | 2039 | Protein_54 | N-6 DNA methylase | - |
| QAP01_RS00285 (QAP01_00285) | - | 64140..65360 (+) | 1221 | WP_286498299.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21365.88 Da Isoelectric Point: 8.8889
>NTDB_id=817351 QAP01_RS00275 WP_286498298.1 61497..62072(+) (comFC) [Helicobacter pylori strain BS28-1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=817351 QAP01_RS00275 WP_286498298.1 61497..62072(+) (comFC) [Helicobacter pylori strain BS28-1]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCGCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATACTCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCGCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATACTCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCAGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.859 |
100 |
0.969 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |