Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAP00_RS05650 Genome accession   NZ_CP122949
Coordinates   1174440..1174844 (-) Length   134 a.a.
NCBI ID   WP_219027957.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1169440..1179844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS05610 (QAP00_05615) - 1169725..1170822 (-) 1098 WP_309256254.1 hypothetical protein -
  QAP00_RS05615 (QAP00_05620) - 1170812..1171597 (-) 786 WP_309256255.1 hypothetical protein -
  QAP00_RS05620 (QAP00_05625) - 1171603..1171989 (-) 387 WP_309256256.1 DUF1294 domain-containing protein -
  QAP00_RS05625 (QAP00_05630) - 1172317..1172706 (-) 390 WP_309256257.1 lysozyme -
  QAP00_RS05630 (QAP00_05635) - 1172818..1172997 (-) 180 WP_309256258.1 lysozyme -
  QAP00_RS05635 (QAP00_05640) - 1173008..1173568 (-) 561 WP_309256259.1 hypothetical protein -
  QAP00_RS05640 (QAP00_05645) - 1173552..1173890 (-) 339 WP_000699911.1 hypothetical protein -
  QAP00_RS05645 (QAP00_05650) - 1174075..1174333 (-) 259 Protein_1097 sel1 repeat family protein -
  QAP00_RS05650 (QAP00_05655) dprB 1174440..1174844 (-) 405 WP_219027957.1 Holliday junction resolvase RuvX Machinery gene
  QAP00_RS05655 (QAP00_05660) dprA 1174841..1175641 (-) 801 WP_129074697.1 DNA-processing protein DprA Machinery gene
  QAP00_RS05660 (QAP00_05665) minE 1175653..1175886 (-) 234 WP_000051411.1 cell division topological specificity factor MinE -
  QAP00_RS05665 (QAP00_05670) minD 1175883..1176689 (-) 807 WP_309256260.1 septum site-determining protein MinD -
  QAP00_RS05670 (QAP00_05675) ilvC 1176714..1177706 (-) 993 WP_309256261.1 ketol-acid reductoisomerase -
  QAP00_RS05680 (QAP00_05685) - 1177955..1178737 (+) 783 WP_309256262.1 NAD+ synthase -
  QAP00_RS05685 (QAP00_05690) - 1178734..1179672 (+) 939 WP_309256263.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15237.78 Da        Isoelectric Point: 9.8304

>NTDB_id=817341 QAP00_RS05650 WP_219027957.1 1174440..1174844(-) (dprB) [Helicobacter pylori strain BS22]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817341 QAP00_RS05650 WP_219027957.1 1174440..1174844(-) (dprB) [Helicobacter pylori strain BS22]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATACGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCTAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGTGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948