Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | QAP00_RS00725 | Genome accession | NZ_CP122949 |
| Coordinates | 150771..151907 (+) | Length | 378 a.a. |
| NCBI ID | WP_309256605.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS22 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 145771..156907
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAP00_RS00690 (QAP00_00690) | panD | 146221..146574 (+) | 354 | WP_309256600.1 | aspartate 1-decarboxylase | - |
| QAP00_RS00695 (QAP00_00695) | - | 146577..146870 (+) | 294 | WP_309256601.1 | YbaB/EbfC family nucleoid-associated protein | - |
| QAP00_RS00700 (QAP00_00700) | - | 146870..147874 (+) | 1005 | WP_309257032.1 | PDZ domain-containing protein | - |
| QAP00_RS00705 (QAP00_00705) | comB6 | 147880..148935 (+) | 1056 | WP_309257033.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| QAP00_RS00710 (QAP00_00710) | comB7 | 148951..149076 (+) | 126 | WP_309256602.1 | comB7 lipoprotein | Machinery gene |
| QAP00_RS00715 (QAP00_00715) | comB8 | 149073..149810 (+) | 738 | WP_309256603.1 | virB8 family protein | Machinery gene |
| QAP00_RS00720 (QAP00_00720) | comB9 | 149810..150778 (+) | 969 | WP_309256604.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| QAP00_RS00725 (QAP00_00725) | comB10 | 150771..151907 (+) | 1137 | WP_309256605.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| QAP00_RS00730 (QAP00_00730) | - | 151977..153389 (+) | 1413 | WP_309256606.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| QAP00_RS00735 (QAP00_00735) | gmd | 153403..154548 (+) | 1146 | WP_309256607.1 | GDP-mannose 4,6-dehydratase | - |
| QAP00_RS00740 (QAP00_00740) | - | 154541..155473 (+) | 933 | WP_309256608.1 | GDP-L-fucose synthase | - |
| QAP00_RS00745 (QAP00_00745) | hypE | 155717..156715 (-) | 999 | WP_180409550.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42141.78 Da Isoelectric Point: 9.8461
>NTDB_id=817336 QAP00_RS00725 WP_309256605.1 150771..151907(+) (comB10) [Helicobacter pylori strain BS22]
MNKWIKGALIFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKTLNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWIKGALIFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKTLNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=817336 QAP00_RS00725 WP_309256605.1 150771..151907(+) (comB10) [Helicobacter pylori strain BS22]
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAACCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGTGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAACCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGTGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.444 |
100 |
0.944 |