Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QAP00_RS00715 Genome accession   NZ_CP122949
Coordinates   149073..149810 (+) Length   245 a.a.
NCBI ID   WP_309256603.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS22     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144073..154810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS00690 (QAP00_00690) panD 146221..146574 (+) 354 WP_309256600.1 aspartate 1-decarboxylase -
  QAP00_RS00695 (QAP00_00695) - 146577..146870 (+) 294 WP_309256601.1 YbaB/EbfC family nucleoid-associated protein -
  QAP00_RS00700 (QAP00_00700) - 146870..147874 (+) 1005 WP_309257032.1 PDZ domain-containing protein -
  QAP00_RS00705 (QAP00_00705) comB6 147880..148935 (+) 1056 WP_309257033.1 P-type conjugative transfer protein TrbL Machinery gene
  QAP00_RS00710 (QAP00_00710) comB7 148951..149076 (+) 126 WP_309256602.1 comB7 lipoprotein Machinery gene
  QAP00_RS00715 (QAP00_00715) comB8 149073..149810 (+) 738 WP_309256603.1 virB8 family protein Machinery gene
  QAP00_RS00720 (QAP00_00720) comB9 149810..150778 (+) 969 WP_309256604.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAP00_RS00725 (QAP00_00725) comB10 150771..151907 (+) 1137 WP_309256605.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAP00_RS00730 (QAP00_00730) - 151977..153389 (+) 1413 WP_309256606.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAP00_RS00735 (QAP00_00735) gmd 153403..154548 (+) 1146 WP_309256607.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28564.76 Da        Isoelectric Point: 8.9546

>NTDB_id=817334 QAP00_RS00715 WP_309256603.1 149073..149810(+) (comB8) [Helicobacter pylori strain BS22]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIAFILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=817334 QAP00_RS00715 WP_309256603.1 149073..149810(+) (comB8) [Helicobacter pylori strain BS22]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTTTTATATTAGCGATTGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACTCCAGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.971