Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QAP00_RS00270 Genome accession   NZ_CP122949
Coordinates   59831..60406 (+) Length   191 a.a.
NCBI ID   WP_309256553.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 55522..67358 59831..60406 within 0


Gene organization within MGE regions


Location: 55522..67358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP00_RS00245 (QAP00_00245) uvrD 55522..57567 (+) 2046 WP_309256551.1 DNA helicase UvrD -
  QAP00_RS00250 (QAP00_00250) flgA 57564..58220 (+) 657 WP_050853984.1 flagellar basal body P-ring formation chaperone FlgA -
  QAP00_RS00255 (QAP00_00255) - 58230..58793 (+) 564 WP_024422431.1 UbiX family flavin prenyltransferase -
  QAP00_RS00260 (QAP00_00260) coaD 58793..59266 (+) 474 WP_033589676.1 pantetheine-phosphate adenylyltransferase -
  QAP00_RS00265 (QAP00_00265) tmk 59268..59843 (+) 576 WP_309256552.1 dTMP kinase -
  QAP00_RS00270 (QAP00_00270) comFC 59831..60406 (+) 576 WP_309256553.1 ComF family protein Machinery gene
  QAP00_RS00275 (QAP00_00275) - 60439..60825 (+) 387 Protein_53 VRR-NUC domain-containing protein -
  QAP00_RS00280 (QAP00_00280) - 60816..61583 (-) 768 Protein_54 Eco47II family restriction endonuclease -
  QAP00_RS00285 (QAP00_00285) dcm 61552..62583 (-) 1032 WP_350315407.1 DNA (cytosine-5-)-methyltransferase -
  QAP00_RS00290 (QAP00_00290) - 62633..63763 (+) 1131 WP_309257083.1 restriction endonuclease subunit S -
  QAP00_RS00295 (QAP00_00295) polA 63829..66498 (+) 2670 WP_309256555.1 DNA polymerase I -
  QAP00_RS00300 (QAP00_00300) - 66612..67358 (+) 747 WP_000919408.1 outer membrane protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21348.99 Da        Isoelectric Point: 9.2848

>NTDB_id=817331 QAP00_RS00270 WP_309256553.1 59831..60406(+) (comFC) [Helicobacter pylori strain BS22]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDKTLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=817331 QAP00_RS00270 WP_309256553.1 59831..60406(+) (comFC) [Helicobacter pylori strain BS22]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAACTTTAGACTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCTTAAAATACCTTAAAACCCTAAACATCAAAGTGCACTTTGCAATCGCTCTTTG
CAGTGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366