Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   R0Q54_RS08125 Genome accession   NZ_CP136992
Coordinates   1507276..1508409 (-) Length   377 a.a.
NCBI ID   WP_317235182.1    Uniprot ID   -
Organism   Bacillus subtilis strain J46     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502276..1513409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS08085 (R0Q54_08085) ywnA 1502406..1502807 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  R0Q54_RS08090 (R0Q54_08090) ureC 1502942..1504651 (-) 1710 WP_014481168.1 urease subunit alpha -
  R0Q54_RS08095 (R0Q54_08095) ureB 1504648..1505022 (-) 375 WP_015251023.1 urease subunit beta -
  R0Q54_RS08100 (R0Q54_08100) ureA 1505019..1505336 (-) 318 WP_046160948.1 urease subunit gamma -
  R0Q54_RS08105 (R0Q54_08105) - 1505531..1505689 (-) 159 WP_120363539.1 hypothetical protein -
  R0Q54_RS08110 (R0Q54_08110) - 1505956..1506168 (-) 213 Protein_1591 urea ABC transporter substrate-binding protein -
  R0Q54_RS08115 (R0Q54_08115) csbD 1506381..1506569 (-) 189 WP_003227718.1 stress response protein CsbD -
  R0Q54_RS08120 (R0Q54_08120) - 1506642..1507121 (-) 480 WP_003244390.1 hypothetical protein -
  R0Q54_RS08125 (R0Q54_08125) rapC 1507276..1508409 (-) 1134 WP_317235182.1 response regulator aspartate phosphatase RapB Regulator
  R0Q54_RS08130 (R0Q54_08130) moaA 1508601..1509626 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  R0Q54_RS08135 (R0Q54_08135) fdhD 1509642..1510430 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  R0Q54_RS08140 (R0Q54_08140) - 1510663..1510824 (-) 162 WP_003227706.1 hypothetical protein -
  R0Q54_RS08145 (R0Q54_08145) ywmD 1510919..1511593 (-) 675 WP_041334709.1 vWA domain-containing protein -
  R0Q54_RS08150 (R0Q54_08150) - 1511646..1511786 (-) 141 WP_014481180.1 hypothetical protein -
  R0Q54_RS08155 (R0Q54_08155) ywmC 1511917..1512600 (-) 684 WP_041334706.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45080.24 Da        Isoelectric Point: 4.7546

>NTDB_id=817331 R0Q54_RS08125 WP_317235182.1 1507276..1508409(-) (rapC) [Bacillus subtilis strain J46]
MAAYEIPSSQVVVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=817331 R0Q54_RS08125 WP_317235182.1 1507276..1508409(-) (rapC) [Bacillus subtilis strain J46]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGTAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422