Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAP02_RS05650 Genome accession   NZ_CP122948
Coordinates   1179350..1179754 (-) Length   134 a.a.
NCBI ID   WP_286463405.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1174350..1184754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP02_RS05625 (QAP02_05625) recJ 1175169..1176719 (+) 1551 WP_286463400.1 single-stranded-DNA-specific exonuclease RecJ -
  QAP02_RS05630 (QAP02_05630) - 1176719..1177600 (+) 882 WP_286463401.1 RluA family pseudouridine synthase -
  QAP02_RS05635 (QAP02_05635) - 1177692..1178252 (-) 561 WP_120927091.1 hypothetical protein -
  QAP02_RS05640 (QAP02_05640) - 1178236..1178574 (-) 339 WP_000699885.1 hypothetical protein -
  QAP02_RS05645 (QAP02_05645) - 1178760..1179119 (-) 360 WP_286464805.1 tetratricopeptide repeat protein -
  QAP02_RS05650 (QAP02_05650) dprB 1179350..1179754 (-) 405 WP_286463405.1 Holliday junction resolvase RuvX Machinery gene
  QAP02_RS05655 (QAP02_05655) dprA 1179751..1180551 (-) 801 WP_286463406.1 DNA-processing protein DprA Machinery gene
  QAP02_RS05660 (QAP02_05660) minE 1180565..1180798 (-) 234 WP_000051425.1 cell division topological specificity factor MinE -
  QAP02_RS05665 (QAP02_05665) minD 1180795..1181601 (-) 807 WP_286463408.1 septum site-determining protein MinD -
  QAP02_RS05670 (QAP02_05670) ilvC 1181625..1182617 (-) 993 WP_286463409.1 ketol-acid reductoisomerase -
  QAP02_RS05680 (QAP02_05680) - 1182866..1183648 (+) 783 WP_140479774.1 NAD+ synthase -
  QAP02_RS05685 (QAP02_05685) - 1183645..1184583 (+) 939 WP_286463411.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15339.96 Da        Isoelectric Point: 10.2181

>NTDB_id=817318 QAP02_RS05650 WP_286463405.1 1179350..1179754(-) (dprB) [Helicobacter pylori strain BS21]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNKSYADTNVRIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGRKNRRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817318 QAP02_RS05650 WP_286463405.1 1179350..1179754(-) (dprB) [Helicobacter pylori strain BS21]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTGCGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATAAAAGCTATGCGGATACGAATGTGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAGGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAACGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925