Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | QAP02_RS00285 | Genome accession | NZ_CP122948 |
| Coordinates | 63643..64218 (+) | Length | 191 a.a. |
| NCBI ID | WP_286464065.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BS21 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 58643..69218
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAP02_RS00260 (QAP02_00260) | uvrD | 59339..61382 (+) | 2044 | Protein_50 | DNA helicase UvrD | - |
| QAP02_RS00265 (QAP02_00265) | flgA | 61379..62035 (+) | 657 | WP_286464055.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| QAP02_RS00270 (QAP02_00270) | - | 62045..62608 (+) | 564 | WP_140574321.1 | UbiX family flavin prenyltransferase | - |
| QAP02_RS00275 (QAP02_00275) | coaD | 62608..63081 (+) | 474 | WP_021305422.1 | pantetheine-phosphate adenylyltransferase | - |
| QAP02_RS00280 (QAP02_00280) | tmk | 63083..63655 (+) | 573 | WP_286464063.1 | dTMP kinase | - |
| QAP02_RS00285 (QAP02_00285) | comFC | 63643..64218 (+) | 576 | WP_286464065.1 | ComF family protein | Machinery gene |
| QAP02_RS00290 (QAP02_00290) | - | 64251..66290 (+) | 2040 | WP_286464067.1 | N-6 DNA methylase | - |
| QAP02_RS00295 (QAP02_00295) | - | 66287..67495 (+) | 1209 | WP_286464069.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21345.90 Da Isoelectric Point: 8.6728
>NTDB_id=817310 QAP02_RS00285 WP_286464065.1 63643..64218(+) (comFC) [Helicobacter pylori strain BS21]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTIKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=817310 QAP02_RS00285 WP_286464065.1 63643..64218(+) (comFC) [Helicobacter pylori strain BS21]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATCCCCCTTTATGGCATCGCCATCGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCCCACTTTGCGATTGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATCCCCCTTTATGGCATCGCCATCGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCATAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATCAAAGCCCACTTTGCGATTGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |