Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAP07_RS02455 Genome accession   NZ_CP122946
Coordinates   513396..513800 (+) Length   134 a.a.
NCBI ID   WP_286444913.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 508396..518800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP07_RS02420 (QAP07_02420) - 508579..509517 (-) 939 WP_286444908.1 tetraacyldisaccharide 4'-kinase -
  QAP07_RS02425 (QAP07_02425) - 509514..510296 (-) 783 WP_286444909.1 NAD+ synthase -
  QAP07_RS02435 (QAP07_02435) ilvC 510483..511547 (+) 1065 WP_286444910.1 ketol-acid reductoisomerase -
  QAP07_RS02440 (QAP07_02440) minD 511556..512362 (+) 807 WP_286444911.1 septum site-determining protein MinD -
  QAP07_RS02445 (QAP07_02445) minE 512359..512592 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  QAP07_RS02450 (QAP07_02450) dprA 512599..513399 (+) 801 WP_286444912.1 DNA-processing protein DprA Machinery gene
  QAP07_RS02455 (QAP07_02455) dprB 513396..513800 (+) 405 WP_286444913.1 Holliday junction resolvase RuvX Machinery gene
  QAP07_RS02460 (QAP07_02460) - 514082..514549 (+) 468 WP_286444915.1 tetratricopeptide repeat protein -
  QAP07_RS02465 (QAP07_02465) - 514735..515073 (+) 339 WP_000699885.1 hypothetical protein -
  QAP07_RS02470 (QAP07_02470) - 515057..515617 (+) 561 WP_286444916.1 hypothetical protein -
  QAP07_RS02475 (QAP07_02475) - 515729..516610 (-) 882 WP_286444917.1 RluA family pseudouridine synthase -
  QAP07_RS02480 (QAP07_02480) recJ 516610..518160 (-) 1551 WP_286444918.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15216.62 Da        Isoelectric Point: 8.2682

>NTDB_id=817276 QAP07_RS02455 WP_286444913.1 513396..513800(+) (dprB) [Helicobacter pylori strain BS31]
MILACDVGLKRIGIAALLNGVILPLEAILRHNKNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNY

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817276 QAP07_RS02455 WP_286444913.1 513396..513800(+) (dprB) [Helicobacter pylori strain BS31]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATT
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955