Detailed information NTG0817003

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: R3J36_RS05475
• Genome accession: NZ_CP136973
• Coordinates: 1218133..1220409 (-)
• Length: 758 a.a.
• NCBI ID: WP_004083750.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain CFBP8068
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1213133..1225409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3J36_RS05455 (R3J36_05445)	trxB	1214179..1215144 (+)	966	WP_004083746.1	thioredoxin-disulfide reductase	-
R3J36_RS05460 (R3J36_05450)	-	1215576..1216709 (+)	1134	WP_027699992.1	GNAT family N-acetyltransferase	-
R3J36_RS05465 (R3J36_05455)	aat	1216721..1217455 (+)	735	WP_004083748.1	leucyl/phenylalanyl-tRNA--protein transferase	-
R3J36_RS05470 (R3J36_05460)	infA	1217572..1217790 (+)	219	WP_004083749.1	translation initiation factor IF-1	-
R3J36_RS05475 (R3J36_05465)	clpC	1218133..1220409 (-)	2277	WP_004083750.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
R3J36_RS05480 (R3J36_05470)	clpS	1220542..1220862 (-)	321	WP_004083751.1	ATP-dependent Clp protease adapter ClpS	-
R3J36_RS05485 (R3J36_05475)	-	1221042..1221500 (+)	459	WP_004083752.1	NUDIX hydrolase	-
R3J36_RS05490 (R3J36_05480)	mnmA	1221497..1222636 (+)	1140	WP_004083753.1	tRNA 2-thiouridine(34) synthase MnmA	-
R3J36_RS05495 (R3J36_05485)	hflD	1222633..1223247 (+)	615	WP_027699993.1	high frequency lysogenization protein HflD	-
R3J36_RS05500 (R3J36_05490)	-	1223355..1224125 (-)	771	WP_027699994.1	endonuclease/exonuclease/phosphatase family protein	-
R3J36_RS05505 (R3J36_05495)	-	1224141..1224923 (-)	783	WP_004089159.1	thiol:disulfide interchange protein DsbA/DsbL	-

Sequence

Protein

• Length: 758 a.a.
• Molecular weight: 83768.23 Da
• Isoelectric Point: 6.3574

>NTDB_id=817003 R3J36_RS05475 WP_004083750.1 1218133..1220409(-) (clpC) [Xylella fastidiosa subsp. multiplex strain CFBP8068]
MFSKDLEQTIGQCYKRTREACHEFMTVEHLLLSLLDNPLAHAVLKACGADVTRLKRDLEQAIEVSITRLDADDGRDTQPT
LGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYFLNQQDISRLDIVNYLSHGITRMGEESDIGQAAENEAKG
ESEANKGDALAEYAINLNEHARNGRIDPLVGRKDEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLAKRIVDRSVPEV
LADAVIYSLDLGALVAGTKYRGDFEKRLKGVLSALRKTPNVVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCI
GSTTFQEYRGIFEKDRALARRFQKIDIVEPTAGEAFEILQGLKPKYEAHHGVTYADDALRAAVDLSVKHIGDRLLPDKAI
DVIDEAGARQRLLPEKERKELIDIEEIETIVTKMARVPAKQVSVSDKDILKHLERNLKMVIFGQEPAIEMLSSAIKLARS
GLGNPDKPIGNFLLAGPTGVGKTEVTKQLAHHLGIELVRFDMSECMEPHSVSRLIGAPPGYVGFDQGGLLTEKIVKTPHC
VLLLDEVEKAHIDVFNILLQVMDRGVLTDTNGREASFKNVILVMTTNAGASQSSRRTIGFTKQDHTSDAMEVICRSFSPE
FRNRLDAIVQFQPLGFSHILRVVDKFIIELEMLLQEKRVVLSATPIARDWLAQHGFDPLMGARPMARVIQEKIKRPLADE
LLFGKLLNGGRVGIDVRDNELIVETYSEPELLFPATVE

Nucleotide

• Length: 2277 bp

>NTDB_id=817003 R3J36_RS05475 WP_004083750.1 1218133..1220409(-) (clpC) [Xylella fastidiosa subsp. multiplex strain CFBP8068]
ATGTTCAGCAAAGATCTCGAGCAAACAATAGGCCAGTGCTACAAGCGAACGCGTGAGGCGTGTCATGAGTTCATGACCGT
TGAGCATCTGCTTCTTTCATTGTTGGACAATCCATTGGCGCACGCTGTGCTGAAGGCTTGCGGAGCGGATGTTACCAGGC
TGAAGCGTGACCTTGAGCAGGCCATTGAGGTATCTATTACCCGCTTGGATGCCGATGACGGCCGTGATACTCAGCCGACG
CTTGGTTTCCAGCGAGTGCTGCAGCGTGCTGTTTACCATGTGCAGTCTTCTGGTAAGAAGGAGGTGACCGGCGCTAATGT
ACTGGTGGCTATCTTTGGTGAAAAGGATTCGCATGCCGTCTACTTTCTGAATCAGCAGGACATCAGCCGACTCGATATCG
TCAACTATTTATCCCACGGTATTACCCGTATGGGCGAGGAGAGTGACATCGGGCAAGCTGCTGAGAATGAGGCTAAGGGG
GAGAGTGAGGCGAATAAGGGGGATGCTCTTGCTGAATATGCTATTAACTTGAATGAACATGCACGGAATGGACGAATTGA
TCCATTGGTTGGGCGCAAAGATGAGATTGAACGTACGATCCAGGTGTTATGCCGACGTCGCAAGAATAACCCGCTCTATG
TAGGTGAAGCGGGCGTTGGTAAAACCGCAATCGCTGAGGGTTTGGCCAAGCGTATTGTTGATCGTAGTGTTCCGGAGGTG
CTTGCCGATGCGGTGATCTACTCGTTGGATCTTGGCGCTCTGGTGGCTGGTACAAAATATCGTGGTGACTTTGAAAAACG
TCTGAAGGGTGTGTTAAGTGCGTTGCGGAAAACCCCTAACGTAGTTTTGTTTATTGATGAAATCCATACCATCATCGGCG
CTGGTTCCGCTTCGGGTGGCACGATGGATGCGTCTAATTTGATCAAGCCAGCCTTGGCTTCAGGTGAGTTACGTTGCATT
GGTTCGACCACGTTTCAAGAGTATCGCGGCATCTTCGAAAAGGACCGTGCTTTGGCGAGGCGTTTTCAGAAGATCGATAT
CGTCGAGCCCACCGCGGGCGAGGCTTTCGAGATTCTACAAGGACTCAAGCCTAAGTATGAGGCACATCACGGCGTTACCT
ATGCTGATGACGCATTGCGCGCTGCGGTTGATTTATCGGTCAAGCACATCGGTGATCGGTTGTTGCCGGATAAGGCGATT
GATGTGATAGATGAGGCAGGCGCGCGTCAGCGTCTGTTGCCGGAGAAAGAACGCAAAGAGCTGATCGATATTGAGGAGAT
TGAGACCATTGTTACGAAGATGGCTAGGGTCCCGGCGAAGCAGGTGAGTGTGAGCGATAAGGACATTTTGAAGCACCTCG
AACGCAATTTGAAGATGGTGATCTTTGGTCAGGAGCCAGCGATTGAGATGCTGTCGTCGGCAATTAAGTTGGCGCGCAGT
GGCCTAGGTAATCCGGATAAGCCGATTGGAAACTTCCTGCTTGCTGGCCCAACGGGGGTTGGTAAAACTGAGGTGACTAA
ACAATTAGCACACCATCTTGGGATCGAGTTGGTACGTTTTGACATGTCTGAGTGCATGGAGCCGCATTCGGTGAGTCGTC
TGATTGGCGCGCCTCCGGGCTATGTTGGTTTTGATCAGGGAGGGTTGCTGACTGAGAAGATCGTCAAGACTCCACACTGC
GTTCTGCTGTTGGACGAGGTGGAAAAAGCGCATATAGATGTCTTCAATATTCTCCTACAGGTCATGGATCGCGGTGTGTT
AACGGATACCAATGGACGTGAGGCGAGTTTTAAAAATGTGATTCTGGTAATGACGACCAATGCAGGTGCGTCCCAATCTT
CACGGCGTACGATTGGTTTCACTAAGCAGGACCATACCAGCGATGCGATGGAAGTGATTTGTCGCAGTTTCAGCCCTGAG
TTCCGCAATCGTCTTGATGCGATTGTGCAGTTTCAGCCACTGGGTTTCAGTCACATTCTGCGGGTTGTCGACAAGTTCAT
CATTGAGTTGGAGATGTTACTTCAAGAGAAACGTGTTGTTTTGTCGGCTACGCCGATTGCTCGCGACTGGCTGGCTCAGC
ATGGTTTTGATCCGCTGATGGGTGCTCGTCCGATGGCACGTGTGATTCAAGAGAAAATCAAACGCCCACTTGCAGACGAA
TTGTTGTTTGGTAAGTTGCTCAACGGTGGTCGGGTCGGCATTGATGTGCGTGACAATGAGTTAATTGTTGAGACTTATTC
GGAACCAGAGCTGTTGTTTCCGGCGACCGTGGAGTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (353-454)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-62)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (654-732)

• ATPase family associated with various cellular activities (AAA) (AAA) (212-310)

• AAA domain (Cdc48 subfamily) (AAA_2) (487-648)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	39.7	100	0.42
clpC	Streptococcus pneumoniae TIGR4	37.005	100	0.394
clpC	Streptococcus pneumoniae Rx1	37.005	100	0.394
clpC	Streptococcus pneumoniae D39	37.005	100	0.394
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	36.777	100	0.394
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	38.718	98.813	0.383