Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   R3J28_RS08650 Genome accession   NZ_CP136971
Coordinates   1856854..1857183 (-) Length   109 a.a.
NCBI ID   WP_004083526.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain Santa29b     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1851854..1862183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J28_RS08625 (R3J28_08600) - 1852330..1853022 (+) 693 WP_004083521.1 Fe2+-dependent dioxygenase -
  R3J28_RS08630 (R3J28_08605) - 1853032..1853682 (+) 651 WP_004083522.1 PepSY-associated TM helix domain-containing protein -
  R3J28_RS08635 (R3J28_08610) - 1853708..1854235 (+) 528 WP_004083523.1 DUF2271 domain-containing protein -
  R3J28_RS08640 (R3J28_08615) - 1854260..1855063 (+) 804 WP_004083524.1 DUF4198 domain-containing protein -
  R3J28_RS08645 (R3J28_08620) - 1855130..1856110 (+) 981 WP_004083525.1 FAD:protein FMN transferase -
  R3J28_RS08650 (R3J28_08625) comE 1856854..1857183 (-) 330 WP_004083526.1 ComEA family DNA-binding protein Machinery gene
  R3J28_RS08655 (R3J28_08630) - 1857622..1858728 (+) 1107 WP_004083527.1 aminoglycoside phosphotransferase family protein -
  R3J28_RS08660 (R3J28_08635) murU 1858725..1859447 (+) 723 WP_004083528.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  R3J28_RS08665 (R3J28_08640) hda 1859632..1860333 (-) 702 WP_004083529.1 DnaA regulatory inactivator Hda -
  R3J28_RS08670 (R3J28_08645) - 1860330..1861487 (-) 1158 WP_004083530.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11915.10 Da        Isoelectric Point: 10.6177

>NTDB_id=816892 R3J28_RS08650 WP_004083526.1 1856854..1857183(-) (comE) [Xylella fastidiosa subsp. multiplex strain Santa29b]
MKSFAMRLKSLLLLFVLAFTVHAANKVDINTASAEEMDKVLVNIGPSKASAIVKYREENGPFKSVEELALVKGIGMKTVE
RNRDLIEIGTRMAPAKPAKGTELKSVGKR

Nucleotide


Download         Length: 330 bp        

>NTDB_id=816892 R3J28_RS08650 WP_004083526.1 1856854..1857183(-) (comE) [Xylella fastidiosa subsp. multiplex strain Santa29b]
ATGAAATCTTTCGCTATGAGATTGAAGTCTTTGTTGTTGTTGTTTGTCCTTGCTTTCACGGTACATGCGGCTAACAAGGT
CGATATCAACACTGCTTCAGCGGAAGAAATGGATAAGGTATTGGTGAATATTGGCCCCTCTAAGGCCTCGGCCATCGTCA
AGTACCGTGAGGAAAATGGTCCCTTCAAAAGTGTTGAGGAATTGGCGCTAGTCAAAGGAATCGGAATGAAGACGGTTGAA
CGGAATCGTGACCTGATTGAAATTGGCACCAGGATGGCACCTGCTAAACCTGCCAAGGGAACGGAGCTGAAGTCGGTGGG
AAAGCGGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(23-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

44.944

81.651

0.367
  comE Neisseria gonorrhoeae MS11

44.944

81.651

0.367
  comE Neisseria gonorrhoeae MS11

44.944

81.651

0.367
  comE Neisseria gonorrhoeae MS11

44.944

81.651

0.367