Detailed information NTG0816809

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: R3J26_RS02500
• Genome accession: NZ_CP136970
• Coordinates: 578722..580002 (+)
• Length: 426 a.a.
• NCBI ID: WP_004086553.1
• Uniprot ID: B0U5N2
• Organism: Xylella fastidiosa subsp. multiplex strain XF3348
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 573722..585002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3J26_RS02480 (R3J26_02470)	-	574181..574642 (-)	462	WP_004086550.1	hypothetical protein	-
R3J26_RS02490 (R3J26_02480)	tig	576535..577830 (+)	1296	WP_004086551.1	trigger factor	-
R3J26_RS02495 (R3J26_02485)	clpP	577968..578594 (+)	627	WP_004086552.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
R3J26_RS02500 (R3J26_02490)	clpX	578722..580002 (+)	1281	WP_004086553.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
R3J26_RS02505 (R3J26_02495)	lon	580154..582625 (+)	2472	WP_004086554.1	endopeptidase La	-
R3J26_RS02510 (R3J26_02500)	-	582846..583130 (+)	285	WP_004086555.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 47064.10 Da
• Isoelectric Point: 5.4589

>NTDB_id=816809 R3J26_RS02500 WP_004086553.1 578722..580002(+) (clpX) [Xylella fastidiosa subsp. multiplex strain XF3348]
MSEDRLSRSGDGNKILYCSFCGKSQREVRKLIAGPSVFICDECVELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYV
IGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTKNILFICGGAFAGLDKVIQQRCTEAGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELD
ESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELPSQEGISKVVV
DESVIENKSEPYLIYQTMPAKVASGE

Nucleotide

• Length: 1281 bp

>NTDB_id=816809 R3J26_RS02500 WP_004086553.1 578722..580002(+) (clpX) [Xylella fastidiosa subsp. multiplex strain XF3348]
ATGAGCGAAGACCGGCTAAGCCGTTCTGGTGACGGAAATAAGATTCTTTACTGCTCATTCTGCGGTAAAAGCCAGCGTGA
GGTTCGCAAGCTGATCGCAGGTCCAAGCGTATTCATTTGTGATGAATGCGTTGAGTTGTGTAACGATATTATTCGCGAGG
AACTGGAAGAAAAGTCGCAATCTGCGCGTTCCAGTTTGCCTAAGCCCAAGGAGATCCTTGAGGTTTTGGATCAGTATGTC
ATTGGCCAGCAGCGTGCTAAGAGGACTCTTGCTGTAGCCGTCTACAACCATTATAAACGGATCGAAAGTCGGCATAAGAA
TGACGACATCGAATTGGCTAAATCTAATATTTTGTTGGTTGGCCCAACAGGCTCCGGCAAGACTTTGCTTGCCGAGACAT
TGGCGCGTTTGCTGAATGTGCCTTTCACGATTGCCGATGCAACCACATTGACTGAGGCTGGCTATGTTGGTGAGGACGTG
GAGAATATCATTCAGAAGTTGTTACAGAAGTGTGATTACGACGTTGAAAAGGCGCAGCATGGGATCGTCTACATTGATGA
AATAGATAAGATTTCCCGTAAGAGTGAGAATCCATCAATTACCCGAGATGTTTCTGGTGAGGGTGTGCAGCAGGCATTGC
TGAAATTGATAGAAGGTACGGTTGCTTCTGTGCCTCCTCAGGGTGGTCGCAAGCATCCACAGCAGGAATTCCTGCAGGTC
GATACCAAGAATATTTTATTCATCTGTGGCGGTGCTTTTGCTGGTCTAGATAAGGTGATCCAACAGCGTTGCACTGAAGC
TGGTGGTATTGGCTTTGGTGTTAAGGTCAAAAGCTCAGAGAGTAAGCGCGATGTTGGTAAGGTACTAGCTGGTGTCGAGC
CAGAGGACCTGATTAAGTTTGGGTTAATCCCTGAATTCGTTGGGCGATTGCCAGTTGTAGCTACACTTGATGAGCTGGAT
GAGTCGGCTTTGGTTAAAATTTTAACCGAGCCAAAGAACGCTATTACAAAACAGTTCAAAAAGCTGTTTGAGATGGAGAA
CGTAGAGTTGGAATTCCGTCAGGACGCGCTTTCAGCAGTGGCTAGGAAAGCTCTTAAGCGCAAGACTGGTGCGCGTGGTC
TCCGTACTATTGTTGAGTTGGTTCTGCTGGATACCATGTACGAACTTCCTTCTCAGGAAGGTATTAGTAAGGTTGTTGTC
GATGAATCGGTTATTGAAAATAAATCTGAGCCTTATCTGATTTATCAAACGATGCCTGCAAAGGTTGCTTCCGGCGAATG
A

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: B0U5N2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.5	93.897	0.587
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.276	93.427	0.516