Detailed information NTG0816693

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: R3J31_RS02490
• Genome accession: NZ_CP136968
• Coordinates: 578742..580022 (+)
• Length: 426 a.a.
• NCBI ID: WP_004086553.1
• Uniprot ID: B0U5N2
• Organism: Xylella fastidiosa subsp. multiplex strain XYL1966/18
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 573742..585022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3J31_RS02470 (R3J31_02455)	-	574201..574662 (-)	462	WP_004086550.1	hypothetical protein	-
R3J31_RS02480 (R3J31_02465)	tig	576555..577850 (+)	1296	WP_004086551.1	trigger factor	-
R3J31_RS02485 (R3J31_02470)	clpP	577988..578614 (+)	627	WP_004086552.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
R3J31_RS02490 (R3J31_02475)	clpX	578742..580022 (+)	1281	WP_004086553.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
R3J31_RS02495 (R3J31_02480)	lon	580174..582645 (+)	2472	WP_004086554.1	endopeptidase La	-
R3J31_RS02500 (R3J31_02485)	-	582866..583150 (+)	285	WP_004086555.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 47064.10 Da
• Isoelectric Point: 5.4589

>NTDB_id=816693 R3J31_RS02490 WP_004086553.1 578742..580022(+) (clpX) [Xylella fastidiosa subsp. multiplex strain XYL1966/18]
MSEDRLSRSGDGNKILYCSFCGKSQREVRKLIAGPSVFICDECVELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYV
IGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTKNILFICGGAFAGLDKVIQQRCTEAGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELD
ESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELPSQEGISKVVV
DESVIENKSEPYLIYQTMPAKVASGE

Nucleotide

• Length: 1281 bp

>NTDB_id=816693 R3J31_RS02490 WP_004086553.1 578742..580022(+) (clpX) [Xylella fastidiosa subsp. multiplex strain XYL1966/18]
ATGAGCGAAGACCGGCTAAGCCGTTCTGGTGACGGAAATAAGATTCTTTACTGCTCATTCTGCGGTAAAAGCCAGCGTGA
GGTTCGCAAGCTGATCGCAGGTCCAAGCGTATTCATTTGTGATGAATGCGTTGAGTTGTGTAACGATATTATTCGCGAGG
AACTGGAAGAAAAGTCGCAATCTGCGCGTTCCAGTTTGCCTAAGCCCAAGGAGATCCTTGAGGTTTTGGATCAGTATGTC
ATTGGCCAGCAGCGTGCTAAGAGGACTCTTGCTGTAGCCGTCTACAACCATTATAAACGGATCGAAAGTCGGCATAAGAA
TGACGACATCGAATTGGCTAAATCTAATATTTTGTTGGTTGGCCCAACAGGCTCCGGCAAGACTTTGCTTGCCGAGACAT
TGGCGCGTTTGCTGAATGTGCCTTTCACGATTGCCGATGCAACCACATTGACTGAGGCTGGCTATGTTGGTGAGGACGTG
GAGAATATCATTCAGAAGTTGTTACAGAAGTGTGATTACGACGTTGAAAAGGCGCAGCATGGGATCGTCTACATTGATGA
AATAGATAAGATTTCCCGTAAGAGTGAGAATCCATCAATTACCCGAGATGTTTCTGGTGAGGGTGTGCAGCAGGCATTGC
TGAAATTGATAGAAGGTACGGTTGCTTCTGTGCCTCCTCAGGGTGGTCGCAAGCATCCACAGCAGGAATTCCTGCAGGTC
GATACCAAGAATATTTTATTCATCTGTGGCGGTGCTTTTGCTGGTCTAGATAAGGTGATCCAACAGCGTTGCACTGAAGC
TGGTGGTATTGGCTTTGGTGTTAAGGTCAAAAGCTCAGAGAGTAAGCGCGATGTTGGTAAGGTACTAGCTGGTGTCGAGC
CAGAGGACCTGATTAAGTTTGGGTTAATCCCTGAATTCGTTGGGCGATTGCCAGTTGTAGCTACACTTGATGAGCTGGAT
GAGTCGGCTTTGGTTAAAATTTTAACCGAGCCAAAGAACGCTATTACAAAACAGTTCAAAAAGCTGTTTGAGATGGAGAA
CGTAGAGTTGGAATTCCGTCAGGACGCGCTTTCAGCAGTGGCTAGGAAAGCTCTTAAGCGCAAGACTGGTGCGCGTGGTC
TCCGTACTATTGTTGAGTTGGTTCTGCTGGATACCATGTACGAACTTCCTTCTCAGGAAGGTATTAGTAAGGTTGTTGTC
GATGAATCGGTTATTGAAAATAAATCTGAGCCTTATCTGATTTATCAAACGATGCCTGCAAAGGTTGCTTCCGGCGAATG
A

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: B0U5N2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.5	93.897	0.587
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.276	93.427	0.516