Detailed information NTG0816421

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QDV38_RS23635
• Genome accession: NZ_CP122578
• Coordinates: 4288194..4288994 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP-2683-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4283194..4293994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDV38_RS23600 (QDV38_23600)	gspH	4283350..4283865 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
QDV38_RS23605 (QDV38_23605)	gspI	4283862..4284227 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QDV38_RS23610 (QDV38_23610)	gspJ	4284224..4284820 (+)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
QDV38_RS23615 (QDV38_23615)	gspK	4284817..4285803 (+)	987	WP_077250502.1	type II secretion system minor pseudopilin GspK	-
QDV38_RS23620 (QDV38_23620)	gspL	4285790..4286983 (+)	1194	WP_012737412.1	type II secretion system protein GspL	-
QDV38_RS23625 (QDV38_23625)	-	4286976..4287461 (+)	486	WP_012737411.1	type II secretion system protein M	-
QDV38_RS23630 (QDV38_23630)	-	4287451..4288197 (+)	747	WP_012737410.1	type II secretion system protein N	-
QDV38_RS23635 (QDV38_23635)	pilD	4288194..4288994 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
QDV38_RS23640 (QDV38_23640)	hrpB	4289042..4291471 (-)	2430	WP_012737409.1	ATP-dependent helicase HrpB	-
QDV38_RS23645 (QDV38_23645)	thpR	4291544..4292080 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
QDV38_RS23650 (QDV38_23650)	sfsA	4292080..4292796 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QDV38_RS23655 (QDV38_23655)	dksA	4292959..4293414 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=816421 QDV38_RS23635 WP_004145898.1 4288194..4288994(+) (pilD) [Klebsiella pneumoniae strain KP-2683-1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=816421 QDV38_RS23635 WP_004145898.1 4288194..4288994(+) (pilD) [Klebsiella pneumoniae strain KP-2683-1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425