Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   RJD36_RS02115 Genome accession   NZ_CP136943
Coordinates   382852..384837 (+) Length   661 a.a.
NCBI ID   WP_069789213.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 377852..389837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS02085 (RJD36_02085) - 378059..379540 (+) 1482 WP_041974303.1 PRD domain-containing protein -
  RJD36_RS02090 (RJD36_02090) - 379530..379952 (+) 423 WP_003063466.1 PTS sugar transporter subunit IIA -
  RJD36_RS02095 (RJD36_02095) - 379967..380404 (+) 438 WP_003063468.1 PTS sugar transporter subunit IIA -
  RJD36_RS02100 (RJD36_02100) - 380410..380709 (+) 300 WP_003063470.1 PTS sugar transporter subunit IIB -
  RJD36_RS02105 (RJD36_02105) - 380737..382095 (+) 1359 WP_069789217.1 PTS ascorbate transporter subunit IIC -
  RJD36_RS02110 (RJD36_02110) fsa 382109..382762 (+) 654 WP_003063474.1 fructose-6-phosphate aldolase -
  RJD36_RS02115 (RJD36_02115) recP/tkt 382852..384837 (+) 1986 WP_069789213.1 transketolase Machinery gene
  RJD36_RS02120 (RJD36_02120) - 384978..385292 (+) 315 WP_117479670.1 bacteriocin immunity protein -
  RJD36_RS02125 (RJD36_02125) pptA 385295..386029 (+) 735 WP_003063479.1 ABC transporter ATP-binding protein Regulator
  RJD36_RS02130 (RJD36_02130) - 386034..387659 (+) 1626 WP_317751409.1 ABC transporter permease -
  RJD36_RS02135 (RJD36_02135) proB 387761..388564 (+) 804 WP_041974199.1 glutamate 5-kinase -
  RJD36_RS02140 (RJD36_02140) - 388579..389829 (+) 1251 WP_058692754.1 glutamate-5-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71277.26 Da        Isoelectric Point: 4.8558

>NTDB_id=816306 RJD36_RS02115 WP_069789213.1 382852..384837(+) (recP/tkt) [Streptococcus pasteurianus strain WUSP082]
MTFDAIDQLAVNTVRTLSIDAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRSWSNRDRFVLSAGHGSALLYSLLH
LSGYNVSIDDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFNIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSKAFTEDIKGKFEAYGWQHILVEDGNDLEAIAKAIEEAKAETE
KPSIIEVKTIIGFGAEKQGTSAVHGAPLGVDGIAYAKKSYGWEYPEFTVPEEVAKRFEVGIKFRGEAAENAWDTKFREYE
AAYPELAAEYKAAFANKPVDVTLEDFEIGTSLASRSSSQQAIQQISAQVPSFWGGSADLSASNNTMVKVESDFQPDNYLG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQQLPTVYVMTHDSIAVGEDGPTHEPVEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETDRPTMLILTRQNLPVLEGTKELAAEGVNKGAYILSEAKGDLDGILIATGSEV
KLALDTQATLEAKGVHVRVVSMPAQNIFDEQDAAYKESILPANVTKRLAIEAGSSFGWGKYVGLQGKTLTIDTWGASAPG
ARIFEEYGFTVDNAVNLYESL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=816306 RJD36_RS02115 WP_069789213.1 382852..384837(+) (recP/tkt) [Streptococcus pasteurianus strain WUSP082]
ATGACATTTGATGCTATTGATCAGTTGGCAGTCAATACTGTCCGTACGCTCTCAATTGATGCCATTCAGGCAGCTAATTC
AGGTCACCCTGGTCTTCCAATGGGAGCTGCACCTATGGCTTATGTTCTTTGGAATCATGTAATGAATGTTAATCCGAAGA
CAAGCCGTTCTTGGTCTAACCGAGATCGTTTTGTACTATCTGCAGGACATGGTTCTGCCCTTTTATACAGCCTTCTTCAT
CTATCAGGTTACAATGTTAGCATTGATGATTTGAAGAATTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAAGT
CAATCATACAGACGGTGTTGAAGCTACAACTGGACCTCTTGGGCAAGGGATTGCCAATGCTGTTGGTATGGCAATGGCAG
AAGCTCACTTAGCAGCTAAATTTAACAAACCAGGATTTAATATCGTTGACCACTACACTTATGCTTTGCATGGTGACGGT
TGCTTGATGGAAGGTGTCAGTCAAGAAGCTGCCAGCCTTGCTGGACATCTTAAACTTGGCAAATTAGTCCTTCTTTACGA
TTCAAACGACATTTCACTTGACGGTCCAACATCAAAAGCTTTCACAGAAGATATCAAAGGTAAATTTGAAGCTTACGGTT
GGCAACACATTCTGGTTGAAGATGGTAATGACCTCGAAGCGATTGCTAAAGCTATCGAAGAAGCAAAAGCTGAAACTGAA
AAACCATCTATTATCGAAGTGAAAACAATCATTGGTTTCGGTGCTGAAAAACAAGGAACATCAGCTGTTCACGGTGCCCC
TCTTGGCGTTGATGGCATTGCTTACGCTAAAAAATCTTACGGTTGGGAATATCCAGAATTCACAGTACCAGAAGAGGTGG
CTAAACGCTTTGAAGTTGGTATCAAATTCCGTGGTGAAGCTGCTGAAAATGCATGGGATACTAAATTCCGTGAATACGAA
GCTGCTTATCCAGAATTAGCCGCTGAATACAAAGCAGCATTCGCTAACAAACCAGTTGACGTGACACTTGAAGATTTCGA
AATCGGTACAAGCCTTGCTAGCCGTTCATCAAGTCAACAAGCTATCCAACAAATCTCAGCACAAGTGCCATCATTCTGGG
GTGGTTCAGCTGACCTTTCTGCATCAAACAATACAATGGTCAAAGTAGAATCTGATTTCCAACCAGACAACTACCTTGGT
CGTAATATTTGGTTTGGTGTGCGTGAATTTGCCATGGCAGCTGCCATGAACGGTATTGCCCTTCATGGTGGTACTCGTGT
TTACGGTGGTACATTCTTCGTATTCTCAAACTACCTTCTTCCAGCTGTTCGTATGGCTGCTCTTCAACAATTACCAACGG
TTTATGTCATGACGCATGATTCAATCGCTGTCGGTGAAGACGGACCAACTCACGAACCAGTTGAACAATTGGCTAGCGTT
CGTTCTATGCCTAACCTTAACGTTATCCGCCCTGCTGACGGTAACGAAACAAATGCTGCATGGAAACGTGCTCTTGCTGA
AACTGATCGTCCAACAATGCTCATCTTGACACGTCAAAATCTTCCTGTCCTTGAAGGGACAAAAGAATTGGCAGCAGAAG
GTGTTAATAAAGGTGCTTATATCCTTTCAGAAGCAAAAGGTGACCTTGACGGTATCCTTATTGCAACAGGTTCTGAAGTG
AAATTGGCGCTTGATACGCAAGCTACTTTGGAAGCAAAAGGTGTTCATGTTCGTGTGGTTTCAATGCCAGCACAAAACAT
CTTTGACGAACAAGACGCTGCTTATAAAGAAAGCATTCTTCCAGCTAACGTCACGAAACGTTTGGCTATCGAAGCTGGTT
CGAGCTTTGGTTGGGGCAAATACGTTGGTCTCCAAGGTAAAACTCTTACAATCGATACTTGGGGCGCATCTGCACCAGGC
GCCAGAATCTTTGAAGAATACGGCTTCACAGTTGATAACGCTGTAAATCTTTATGAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

57.295

99.546

0.57