Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QCM40_RS01450 Genome accession   NZ_CP122516
Coordinates   275781..276356 (-) Length   191 a.a.
NCBI ID   WP_279955568.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 270781..281356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS01430 (QCM40_01430) - 272410..273606 (-) 1197 WP_279955567.1 restriction endonuclease subunit S -
  QCM40_RS01435 (QCM40_01435) dcm 273614..274645 (+) 1032 WP_127984433.1 DNA (cytosine-5-)-methyltransferase -
  QCM40_RS01440 (QCM40_01440) - 274614..275375 (+) 762 WP_001183567.1 Eco47II family restriction endonuclease -
  QCM40_RS01445 (QCM40_01445) - 275362..275748 (-) 387 Protein_281 VRR-NUC domain-containing protein -
  QCM40_RS01450 (QCM40_01450) comFC 275781..276356 (-) 576 WP_279955568.1 ComF family protein Machinery gene
  QCM40_RS01455 (QCM40_01455) tmk 276344..276919 (-) 576 WP_279955569.1 dTMP kinase -
  QCM40_RS01460 (QCM40_01460) coaD 276921..277394 (-) 474 WP_121278733.1 pantetheine-phosphate adenylyltransferase -
  QCM40_RS01465 (QCM40_01465) - 277394..277957 (-) 564 WP_279955570.1 UbiX family flavin prenyltransferase -
  QCM40_RS01470 (QCM40_01470) flgA 277967..278623 (-) 657 WP_279955571.1 flagellar basal body P-ring formation chaperone FlgA -
  QCM40_RS01475 (QCM40_01475) uvrD 278620..280665 (-) 2046 WP_279955572.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21353.96 Da        Isoelectric Point: 9.0940

>NTDB_id=816253 QCM40_RS01450 WP_279955568.1 275781..276356(-) (comFC) [Helicobacter pylori strain HP34]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYTLIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=816253 QCM40_RS01450 WP_279955568.1 275781..276356(-) (comFC) [Helicobacter pylori strain HP34]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACA
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCTTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.979

100

0.372