Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QCM05_RS03505 Genome accession   NZ_CP122515
Coordinates   717200..717937 (+) Length   245 a.a.
NCBI ID   WP_279963451.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP22     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 712200..722937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM05_RS03480 (QCM05_03480) panD 714352..714702 (+) 351 WP_073470207.1 aspartate 1-decarboxylase -
  QCM05_RS03485 (QCM05_03485) - 714713..715006 (+) 294 WP_131128566.1 YbaB/EbfC family nucleoid-associated protein -
  QCM05_RS03490 (QCM05_03490) - 715006..716001 (+) 996 WP_279963507.1 PDZ domain-containing protein -
  QCM05_RS03495 (QCM05_03495) comB6 716007..717062 (+) 1056 WP_279963508.1 P-type conjugative transfer protein TrbL Machinery gene
  QCM05_RS03500 (QCM05_03500) comB7 717078..717203 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  QCM05_RS03505 (QCM05_03505) comB8 717200..717937 (+) 738 WP_279963451.1 virB8 family protein Machinery gene
  QCM05_RS03510 (QCM05_03510) comB9 717937..718899 (+) 963 WP_279963452.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QCM05_RS03515 (QCM05_03515) comB10 718892..720028 (+) 1137 WP_279963453.1 DNA type IV secretion system protein ComB10 Machinery gene
  QCM05_RS03520 (QCM05_03520) - 720098..721510 (+) 1413 WP_279963454.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QCM05_RS03525 (QCM05_03525) gmd 721524..722669 (+) 1146 WP_140446145.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28610.83 Da        Isoelectric Point: 8.9546

>NTDB_id=816244 QCM05_RS03505 WP_279963451.1 717200..717937(+) (comB8) [Helicobacter pylori strain HP22]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIAFVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSIFSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=816244 QCM05_RS03505 WP_279963451.1 717200..717937(+) (comB8) [Helicobacter pylori strain HP22]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTTTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTTCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGATGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.547

100

0.963