Detailed information NTG0816242

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QCM05_RS03495
• Genome accession: NZ_CP122515
• Coordinates: 716007..717062 (+)
• Length: 351 a.a.
• NCBI ID: WP_279963508.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HP22
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 711007..722062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCM05_RS03465 (QCM05_03465)	-	711418..711831 (+)	414	WP_001023005.1	universal stress protein	-
QCM05_RS03470 (QCM05_03470)	-	711862..712137 (+)	276	WP_279963449.1	ATP-dependent Clp protease adaptor ClpS	-
QCM05_RS03475 (QCM05_03475)	-	712137..714362 (+)	2226	WP_279963450.1	ATP-dependent Clp protease ATP-binding subunit	-
QCM05_RS03480 (QCM05_03480)	panD	714352..714702 (+)	351	WP_073470207.1	aspartate 1-decarboxylase	-
QCM05_RS03485 (QCM05_03485)	-	714713..715006 (+)	294	WP_131128566.1	YbaB/EbfC family nucleoid-associated protein	-
QCM05_RS03490 (QCM05_03490)	-	715006..716001 (+)	996	WP_279963507.1	PDZ domain-containing protein	-
QCM05_RS03495 (QCM05_03495)	comB6	716007..717062 (+)	1056	WP_279963508.1	P-type conjugative transfer protein TrbL	Machinery gene
QCM05_RS03500 (QCM05_03500)	comB7	717078..717203 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
QCM05_RS03505 (QCM05_03505)	comB8	717200..717937 (+)	738	WP_279963451.1	virB8 family protein	Machinery gene
QCM05_RS03510 (QCM05_03510)	comB9	717937..718899 (+)	963	WP_279963452.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QCM05_RS03515 (QCM05_03515)	comB10	718892..720028 (+)	1137	WP_279963453.1	DNA type IV secretion system protein ComB10	Machinery gene
QCM05_RS03520 (QCM05_03520)	-	720098..721510 (+)	1413	WP_279963454.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39701.64 Da
• Isoelectric Point: 8.8165

>NTDB_id=816242 QCM05_RS03495 WP_279963508.1 716007..717062(+) (comB6) [Helicobacter pylori strain HP22]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLNHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=816242 QCM05_RS03495 WP_279963508.1 716007..717062(+) (comB6) [Helicobacter pylori strain HP22]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAACCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCTCTCAATTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972