Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QCM05_RS00650 Genome accession   NZ_CP122515
Coordinates   135847..136251 (-) Length   134 a.a.
NCBI ID   WP_140445955.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 130847..141251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM05_RS00620 (QCM05_00620) - 131007..131963 (-) 957 Protein_122 hypothetical protein -
  QCM05_RS00625 (QCM05_00625) - 132365..133438 (+) 1074 WP_279963062.1 tyrosine-type recombinase/integrase -
  QCM05_RS00630 (QCM05_00630) - 133520..134204 (-) 685 Protein_124 CAAX protease -
  QCM05_RS07650 - 134245..134369 (-) 125 Protein_125 lysozyme -
  QCM05_RS00635 (QCM05_00635) - 134380..134946 (-) 567 WP_140596169.1 hypothetical protein -
  QCM05_RS00640 (QCM05_00640) - 134930..135268 (-) 339 WP_000699916.1 hypothetical protein -
  QCM05_RS00645 (QCM05_00645) - 135458..135680 (-) 223 Protein_128 tetratricopeptide repeat protein -
  QCM05_RS00650 (QCM05_00650) dprB 135847..136251 (-) 405 WP_140445955.1 Holliday junction resolvase RuvX Machinery gene
  QCM05_RS00655 (QCM05_00655) dprA 136248..137048 (-) 801 WP_140445954.1 DNA-processing protein DprA Machinery gene
  QCM05_RS00660 (QCM05_00660) minE 137060..137293 (-) 234 WP_120818870.1 cell division topological specificity factor MinE -
  QCM05_RS00665 (QCM05_00665) minD 137290..138096 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  QCM05_RS00670 (QCM05_00670) ilvC 138121..139113 (-) 993 WP_279963064.1 ketol-acid reductoisomerase -
  QCM05_RS00680 (QCM05_00680) - 139371..140153 (+) 783 WP_279963065.1 NAD+ synthase -
  QCM05_RS00685 (QCM05_00685) - 140150..141088 (+) 939 WP_279963066.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15236.68 Da        Isoelectric Point: 8.2822

>NTDB_id=816231 QCM05_RS00650 WP_140445955.1 135847..136251(-) (dprB) [Helicobacter pylori strain HP22]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLEHLGNKNKRLAIKDGRLDSLSACRILEHYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=816231 QCM05_RS00650 WP_140445955.1 135847..136251(-) (dprB) [Helicobacter pylori strain HP22]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGATACGAACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCGTAGAAGCTTATGAAAATTTAGAGCATTTGGGCAATAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCACTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933