Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QAO22_RS13285 Genome accession   NZ_CP122490
Coordinates   2699655..2700371 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain GE-MSSA40     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2694655..2705371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO22_RS13265 (QAO22_13245) - 2695748..2696698 (+) 951 WP_411896380.1 LacI family DNA-binding transcriptional regulator -
  QAO22_RS13270 (QAO22_13250) - 2696847..2698331 (+) 1485 WP_103197143.1 sucrose-6-phosphate hydrolase -
  QAO22_RS13275 (QAO22_13255) - 2698328..2699287 (+) 960 WP_001253301.1 carbohydrate kinase family protein -
  QAO22_RS13280 (QAO22_13260) - 2699476..2699583 (-) 108 WP_031789494.1 hypothetical protein -
  QAO22_RS13285 (QAO22_13265) agrA 2699655..2700371 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  QAO22_RS13290 (QAO22_13270) agrC 2700390..2701682 (-) 1293 WP_001670396.1 quorum-sensing sensor histidine kinase AgrC -
  QAO22_RS13295 (QAO22_13275) agrD 2701707..2701847 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  QAO22_RS13300 (QAO22_13280) agrB 2701844..2702413 (-) 570 WP_001105713.1 accessory gene regulator AgrB -
  QAO22_RS13305 (QAO22_13285) hld 2702703..2702783 (+) 81 WP_000046022.1 delta-hemolysin -
  QAO22_RS13310 (QAO22_13290) istB 2702961..2703728 (-) 768 WP_001095317.1 IS21-like element helper ATPase IstB -
  QAO22_RS13315 (QAO22_13295) istA 2703740..2704936 (-) 1197 WP_142386501.1 IS21 family transposase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=816076 QAO22_RS13285 WP_000688492.1 2699655..2700371(-) (agrA) [Staphylococcus aureus strain GE-MSSA40]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=816076 QAO22_RS13285 WP_000688492.1 2699655..2700371(-) (agrA) [Staphylococcus aureus strain GE-MSSA40]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATCCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCATAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACACGTATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATCGAATCTATAG
ATTCGAAAGAGCGCATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1