Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   QAO16_RS10875 Genome accession   NZ_CP122489
Coordinates   2163300..2164928 (+) Length   542 a.a.
NCBI ID   WP_001186594.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA42     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2158300..2169928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO16_RS10860 (QAO16_10850) - 2159543..2159821 (+) 279 WP_001100996.1 hypothetical protein -
  QAO16_RS10865 (QAO16_10855) - 2159951..2161597 (-) 1647 WP_000277741.1 IS1182-like element ISSau3 family transposase -
  QAO16_RS10870 (QAO16_10860) ccrA 2161930..2163279 (+) 1350 WP_000806249.1 cassette chromosome recombinase CcrA Machinery gene
  QAO16_RS10875 (QAO16_10865) ccrB 2163300..2164928 (+) 1629 WP_001186594.1 cassette chromosome recombinase CcrB Machinery gene
  QAO16_RS10880 (QAO16_10870) - 2165394..2165744 (+) 351 WP_000859154.1 SAUGI family uracil-DNA glycosylase inhibitor -
  QAO16_RS10885 (QAO16_10875) - 2165831..2166145 (+) 315 WP_000703986.1 DUF960 family protein -
  QAO16_RS10890 (QAO16_10880) - 2166161..2166664 (+) 504 WP_000849084.1 DUF1643 domain-containing protein -
  QAO16_RS10895 (QAO16_10885) - 2166679..2166900 (+) 222 WP_001015148.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62549.40 Da        Isoelectric Point: 9.5281

>NTDB_id=816026 QAO16_RS10875 WP_001186594.1 2163300..2164928(+) (ccrB) [Staphylococcus aureus strain GE-MSSA42]
MQQLKQKRIGIYVRVSTEIQSTEGYSINGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIIKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSEKPQVHGKGTNLLTGIIRCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQIFEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLIDIANQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIERIDIRKDENHKKQFYVTLKLNNEIIKQLFNDTPLNEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=816026 QAO16_RS10875 WP_001186594.1 2163300..2164928(+) (ccrB) [Staphylococcus aureus strain GE-MSSA42]
ATGCAACAACTCAAACAAAAACGTATCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CAATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTATTAAAAGATGCGAACGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACGAATAGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGCTACAAATACTTGCAAGCTTTTCTG
AATTTGAACGCAATAACATTGTCGAGAACGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTAGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCTAATATCATCAAATA
TATCTTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATGGCTAATGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATTGCTTATATCCTTTCCAATCCCTTTTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGACGTAAAGGCCTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAACAAGTAAGTGAAAAACCACAAGTGCATGGTAAAGGAACCA
ATCTATTAACGGGTATTATTCGCTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACTACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAATTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCTGAGGTGATTGAGAAATACGTTATGGATCAAATATTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCATTGACATTGCAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTATACCTAACGGTTATTGAACGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCAACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-281)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

83.21

100

0.832