Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QAO16_RS02775 Genome accession   NZ_CP122489
Coordinates   499751..500248 (+) Length   165 a.a.
NCBI ID   WP_001794055.1    Uniprot ID   A0A7U7EV69
Organism   Staphylococcus aureus strain GE-MSSA42     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494751..505248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO16_RS02735 (QAO16_02725) - 494795..495781 (+) 987 WP_182251794.1 ROK family glucokinase -
  QAO16_RS02740 (QAO16_02730) - 495781..496110 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAO16_RS02745 (QAO16_02735) - 496107..496730 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QAO16_RS02750 (QAO16_02740) comGA 496782..497756 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QAO16_RS02755 (QAO16_02745) comGB 497728..498798 (+) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAO16_RS02760 (QAO16_02750) comGC 498812..499123 (+) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  QAO16_RS02765 (QAO16_02755) comGD 499101..499547 (+) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAO16_RS02770 (QAO16_02760) comGE 499534..499833 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAO16_RS02775 (QAO16_02765) comGF 499751..500248 (+) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAO16_RS02780 (QAO16_02770) - 500345..500491 (+) 147 WP_001789879.1 hypothetical protein -
  QAO16_RS02785 (QAO16_02775) - 500481..501005 (+) 525 WP_001015125.1 shikimate kinase -
  QAO16_RS02790 (QAO16_02780) gcvT 501164..502255 (+) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  QAO16_RS02795 (QAO16_02785) gcvPA 502275..503621 (+) 1347 WP_000019697.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QAO16_RS02800 (QAO16_02790) gcvPB 503614..505086 (+) 1473 WP_000202178.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19224.98 Da        Isoelectric Point: 10.2192

>NTDB_id=816010 QAO16_RS02775 WP_001794055.1 499751..500248(+) (comGF) [Staphylococcus aureus strain GE-MSSA42]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLNKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=816010 QAO16_RS02775 WP_001794055.1 499751..500248(+) (comGF) [Staphylococcus aureus strain GE-MSSA42]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTAATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAACAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACAATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EV69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

96.97

100

0.97