Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QAY59_RS07945 Genome accession   NZ_CP122487
Coordinates   1564179..1564574 (-) Length   131 a.a.
NCBI ID   WP_411907801.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MRSA45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1559179..1569574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY59_RS07920 (QAY59_07910) thiE 1559641..1560282 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  QAY59_RS07925 (QAY59_07915) thiM 1560275..1561075 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  QAY59_RS07930 (QAY59_07920) thiD 1561059..1561889 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QAY59_RS07935 (QAY59_07925) tenA 1561882..1562571 (-) 690 WP_000396077.1 thiaminase II -
  QAY59_RS07940 (QAY59_07930) sceD 1563095..1563790 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  QAY59_RS07945 (QAY59_07935) ssb 1564179..1564574 (-) 396 WP_411907801.1 single-stranded DNA-binding protein Machinery gene
  QAY59_RS07950 (QAY59_07940) - 1564768..1565208 (+) 441 WP_000846746.1 YwpF-like family protein -
  QAY59_RS07955 (QAY59_07945) fabZ 1565266..1565706 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QAY59_RS07960 (QAY59_07950) murA 1565740..1567005 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QAY59_RS07965 (QAY59_07955) - 1567116..1567349 (-) 234 WP_000384523.1 DUF1146 family protein -
  QAY59_RS07970 (QAY59_07960) - 1567481..1567573 (-) 93 WP_031864518.1 hypothetical protein -
  QAY59_RS07975 (QAY59_07965) - 1567911..1568315 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15133.20 Da        Isoelectric Point: 5.2644

>NTDB_id=815943 QAY59_RS07945 WP_411907801.1 1564179..1564574(-) (ssb) [Staphylococcus aureus strain IT-MRSA45]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTRFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=815943 QAY59_RS07945 WP_411907801.1 1564179..1564574(-) (ssb) [Staphylococcus aureus strain IT-MRSA45]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACGCTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

99.237

100

0.992
  ssb Staphylococcus aureus N315

98.473

100

0.985