Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QAY84_RS10585 Genome accession   NZ_CP122486
Coordinates   2157813..2158208 (-) Length   131 a.a.
NCBI ID   WP_411906521.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2152813..2163208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY84_RS10560 (QAY84_10565) thiE 2153274..2153915 (-) 642 WP_000483150.1 thiamine phosphate synthase -
  QAY84_RS10565 (QAY84_10570) thiM 2153917..2154708 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  QAY84_RS10570 (QAY84_10575) thiD 2154692..2155522 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QAY84_RS10575 (QAY84_10580) tenA 2155515..2156204 (-) 690 WP_000396068.1 thiaminase II -
  QAY84_RS10580 (QAY84_10585) sceD 2156729..2157424 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  QAY84_RS10585 (QAY84_10590) ssb 2157813..2158208 (-) 396 WP_411906521.1 single-stranded DNA-binding protein Machinery gene
  QAY84_RS10590 (QAY84_10595) - 2158402..2158842 (+) 441 WP_000846746.1 YwpF-like family protein -
  QAY84_RS10595 (QAY84_10600) fabZ 2158899..2159339 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QAY84_RS10600 (QAY84_10605) murA 2159373..2160638 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QAY84_RS10605 (QAY84_10610) - 2160749..2160982 (-) 234 WP_000384523.1 DUF1146 family protein -
  QAY84_RS10610 (QAY84_10615) - 2161861..2162265 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15128.14 Da        Isoelectric Point: 5.2370

>NTDB_id=815906 QAY84_RS10585 WP_411906521.1 2157813..2158208(-) (ssb) [Staphylococcus aureus strain IT-MSSA48]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQDTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=815906 QAY84_RS10585 WP_411906521.1 2157813..2158208(-) (ssb) [Staphylococcus aureus strain IT-MSSA48]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGATACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

98.473

100

0.985
  ssb Staphylococcus aureus MW2

97.71

100

0.977