Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   R1T10_RS01055 Genome accession   NZ_CP136807
Coordinates   196309..196773 (-) Length   154 a.a.
NCBI ID   WP_011798742.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191309..201773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS01035 rfbC 192021..192578 (+) 558 WP_002224368.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  R1T10_RS01040 - 192622..194640 (-) 2019 WP_002224367.1 oligopeptide transporter, OPT family -
  R1T10_RS01045 dnaJ 194836..195957 (-) 1122 WP_002215274.1 molecular chaperone DnaJ -
  R1T10_RS01050 - 196039..196197 (-) 159 WP_002215272.1 hypothetical protein -
  R1T10_RS01055 comE 196309..196773 (-) 465 WP_011798742.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16605.84 Da        Isoelectric Point: 10.8773

>NTDB_id=815813 R1T10_RS01055 WP_011798742.1 196309..196773(-) (comE) [Neisseria meningitidis NMB]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=815813 R1T10_RS01055 WP_011798742.1 196309..196773(-) (comE) [Neisseria meningitidis NMB]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74