Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HSX14_RS09265 Genome accession   NZ_AP023189
Coordinates   2005335..2005970 (+) Length   211 a.a.
NCBI ID   WP_173173797.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain TUM18999     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2000335..2010970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSX14_RS09245 (TUM18999_18320) lolD 2000359..2001042 (+) 684 WP_173174046.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HSX14_RS09250 (TUM18999_18330) - 2001044..2002288 (+) 1245 WP_173173793.1 lipoprotein-releasing ABC transporter permease subunit -
  HSX14_RS09255 (TUM18999_18340) - 2002359..2002889 (-) 531 WP_173173795.1 DUF2062 domain-containing protein -
  HSX14_RS09260 (TUM18999_18350) comA 2003040..2005262 (+) 2223 WP_228723564.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HSX14_RS09265 (TUM18999_18360) exbB 2005335..2005970 (+) 636 WP_173173797.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HSX14_RS09270 (TUM18999_18370) - 2005967..2006410 (+) 444 WP_173173799.1 ExbD/TolR family protein -
  HSX14_RS09275 (TUM18999_18380) lpxK 2006410..2007414 (+) 1005 WP_173173801.1 tetraacyldisaccharide 4'-kinase -
  HSX14_RS09280 (TUM18999_18390) - 2007456..2007641 (+) 186 WP_111262773.1 Trm112 family protein -
  HSX14_RS09285 (TUM18999_18400) kdsB 2007641..2008405 (+) 765 WP_173173803.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HSX14_RS09290 (TUM18999_18410) - 2008405..2008863 (+) 459 WP_173173805.1 low molecular weight protein-tyrosine-phosphatase -
  HSX14_RS09295 (TUM18999_18420) murB 2008860..2009879 (+) 1020 WP_173173807.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22976.18 Da        Isoelectric Point: 6.7295

>NTDB_id=81581 HSX14_RS09265 WP_173173797.1 2005335..2005970(+) (exbB) [Pseudomonas tohonis strain TUM18999]
MWELVKAGGWMMLPIILSSIAATAIIVERLWTLRANRIAPPQLLGQVWRMVKDKQLNAQKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNTLGTIAAMGPLLGLLGTVFGMIEIFSGFMDNGMANAPALAGGIGKALITTAA
GLMVAIPAVFFHRFLLRRVDELVVAMEQEAIKLVEVTQGDREVDFAEEAKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=81581 HSX14_RS09265 WP_173173797.1 2005335..2005970(+) (exbB) [Pseudomonas tohonis strain TUM18999]
GTGTGGGAGCTGGTCAAAGCAGGCGGCTGGATGATGCTGCCTATCATTCTGAGTTCCATCGCAGCCACCGCCATCATTGT
GGAGCGCCTGTGGACGCTTCGTGCCAATCGCATCGCACCGCCGCAATTGCTCGGCCAGGTGTGGCGCATGGTCAAGGACA
AGCAGCTCAACGCGCAGAAGCTCAAGGAACTGCGTGCATCGTCCCCGCTGGGCGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCATCCCGCGTCATCCATGAGCTGGAGCGCTACCT
CAACACCCTGGGCACCATCGCCGCCATGGGCCCGCTGCTGGGCCTTTTGGGTACCGTGTTCGGGATGATCGAGATCTTCA
GCGGCTTCATGGACAACGGCATGGCGAACGCCCCGGCCCTGGCCGGCGGTATCGGCAAGGCGCTGATCACCACCGCGGCT
GGCCTGATGGTCGCCATCCCCGCCGTGTTCTTCCACCGTTTCCTGCTGCGTCGTGTCGACGAGCTGGTGGTGGCCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTGACCCAGGGCGATCGTGAAGTGGACTTCGCAGAGGAAGCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.609

98.104

0.81

Multiple sequence alignment