Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   RYQ61_RS08085 Genome accession   NZ_CP136799
Coordinates   1596665..1597897 (+) Length   410 a.a.
NCBI ID   WP_003072918.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591665..1602897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS08055 (RYQ61_08055) - 1592338..1593180 (+) 843 WP_003034933.1 hypothetical protein -
  RYQ61_RS08060 (RYQ61_08060) - 1593219..1593482 (+) 264 WP_003024913.1 chorismate mutase -
  RYQ61_RS08065 (RYQ61_08065) - 1593498..1594715 (+) 1218 WP_003072925.1 voltage-gated chloride channel family protein -
  RYQ61_RS08070 (RYQ61_08070) - 1594801..1595640 (+) 840 WP_003072923.1 thymidylate synthase -
  RYQ61_RS08075 (RYQ61_08075) - 1595926..1596438 (+) 513 WP_020998712.1 dihydrofolate reductase -
  RYQ61_RS08080 (RYQ61_08080) - 1596438..1596611 (+) 174 WP_003024903.1 hypothetical protein -
  RYQ61_RS08085 (RYQ61_08085) clpX 1596665..1597897 (+) 1233 WP_003072918.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RYQ61_RS08090 (RYQ61_08090) yihA 1597910..1598497 (+) 588 WP_102568060.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RYQ61_RS08095 (RYQ61_08095) - 1598620..1599327 (+) 708 WP_102568059.1 glucosaminidase domain-containing protein -
  RYQ61_RS08100 (RYQ61_08100) - 1599502..1600299 (+) 798 WP_003077927.1 formate/nitrite transporter family protein -
  RYQ61_RS08105 (RYQ61_08105) - 1600516..1602252 (+) 1737 WP_102568058.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45705.19 Da        Isoelectric Point: 4.3968

>NTDB_id=815697 RYQ61_RS08085 WP_003072918.1 1596665..1597897(+) (clpX) [Streptococcus intermedius strain XH2169]
MPTNRTSEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREEEDDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVEDLVR
ILREPKNALVKQYQTLLSYDDVTLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDIMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=815697 RYQ61_RS08085 WP_003072918.1 1596665..1597897(+) (clpX) [Streptococcus intermedius strain XH2169]
ATGCCTACAAATCGTACGAGCGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGTCAAGAAGAAGTTCAAAAAATTAT
TGCAGGAAATAATGCATTTATTTGTAACGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TCTTGGCAGACTTGTCGGAAGTACCAAAACCACAAGAATTGCTTAACATTTTAAATCACTATGTAATAGGGCAAGATCGT
GCAAAGCGAGCGCTGGCTGTTGCTGTATACAATCACTATAAACGTATCAATTTTCACGATAATCGTGAAGAAGAGGATGA
TGTCGAATTACAAAAATCCAATATCCTTATGATTGGTCCAACCGGTTCTGGTAAGACTTTTCTTGCTCAAACTTTAGCGA
AAAGTCTAAATGTTCCCTTTGCGATTGCAGATGCAACGGCTTTGACAGAAGCTGGATATGTCGGAGAAGATGTTGAAAAC
ATTCTCTTAAAACTCTTGCAAGCTGCAGATTTTAATATTGAGCGTGCAGAACGTGGCATTATCTATGTAGATGAGATTGA
CAAAATTGCAAAGAAAAGCGAAAATGTCTCTATTACTCGTGATGTGTCTGGTGAAGGCGTTCAGCAAGCTTTGCTTAAAA
TCATTGAAGGGACTGTAGCTAGTGTACCTCCTCAAGGCGGTCGCAAACATCCACAGCAAGAAATGATTCAAGTGGATACT
AAGAATATCCTTTTTATCGTTGGTGGTGCTTTTGACGGAATTGAAGAAATTGTTAAACAACGTCTAGGTGAAAAGATTAT
TGGTTTTGGTCAAAATAACAAAGCTATTGATGAAAATAGTTCTTATATGCAAGAAATTATTTCCGAAGATATTCAAAAAT
TTGGACTCATCCCCGAATTGATTGGTCGTTTACCAGTGTTTGCTGCGCTTGAGCCTTTGACAGTTGAGGATTTGGTACGA
ATTCTTCGTGAGCCAAAGAACGCCCTAGTAAAACAATATCAAACTCTCCTTTCTTATGATGATGTTACATTAGAGTTTGA
TGATGATGCCCTCCAAGAAATTGCCAACAAGGCCATTGAACGTAAGACAGGTGCTCGTGGATTGCGTTCAATTATCGAAG
AAACTATGATGGATATCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAATTAGTGCGGATTACCAAGGAAGCAGTTGAT
GGAACAGATAAACCGATTTTAGAAACAGCTTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.706

98.049

0.576