Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   RYQ61_RS06255 Genome accession   NZ_CP136799
Coordinates   1202421..1203197 (-) Length   258 a.a.
NCBI ID   WP_102567791.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1197421..1208197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS06225 (RYQ61_06225) - 1197781..1198776 (+) 996 WP_082311763.1 sensor histidine kinase -
  RYQ61_RS06230 (RYQ61_06230) vraR 1198778..1199410 (+) 633 WP_009568138.1 response regulator transcription factor Regulator
  RYQ61_RS06235 (RYQ61_06235) - 1199450..1200850 (+) 1401 WP_102567792.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  RYQ61_RS06240 (RYQ61_06240) - 1200852..1201244 (+) 393 WP_003073658.1 S1 RNA-binding domain-containing protein -
  RYQ61_RS06245 (RYQ61_06245) - 1201364..1201681 (-) 318 WP_102567839.1 DUF960 domain-containing protein -
  RYQ61_RS06250 (RYQ61_06250) - 1201801..1202334 (-) 534 WP_003073655.1 DUF402 domain-containing protein -
  RYQ61_RS06255 (RYQ61_06255) recX 1202421..1203197 (-) 777 WP_102567791.1 recombination regulator RecX Regulator
  RYQ61_RS06260 (RYQ61_06260) - 1203261..1204037 (-) 777 WP_102567790.1 aminoglycoside 3'-phosphotransferase -
  RYQ61_RS06265 (RYQ61_06265) rlmD 1204094..1205473 (+) 1380 WP_102567789.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  RYQ61_RS06270 (RYQ61_06270) - 1205803..1205967 (-) 165 WP_371860066.1 nitronate monooxygenase -
  RYQ61_RS06275 (RYQ61_06275) - 1206085..1206318 (+) 234 WP_102567788.1 DUF1858 domain-containing protein -
  RYQ61_RS06280 (RYQ61_06280) - 1206318..1207679 (+) 1362 WP_096362583.1 DUF438 domain-containing protein -
  RYQ61_RS06285 (RYQ61_06285) - 1207690..1207944 (+) 255 WP_003073643.1 DUF1912 family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30349.99 Da        Isoelectric Point: 9.2303

>NTDB_id=815677 RYQ61_RS06255 WP_102567791.1 1202421..1203197(-) (recX) [Streptococcus intermedius strain XH2169]
MKITKIEKKKRLYLLELDEIDKLYITEDTIVHFMLSKGMNISEQELKEIQDYAQFSYGKNLALYYLSFKQRTVKEVRDYL
TKHEISLDTIEKVLTILIKDNWIDDRQYAYSFIHSNLLSGDKGAFVLKQKLTQKGITAPIIDEELCKFDFTEVSQKVAAK
LLRNYQSKLPSKALQDKILQSMMNKGFSYTEAKAAYQTLDIKEDEETQQKLLYKELDKQYHKYSKKYGGYELKQRLTQAL
ARKGYDFSDIASALREYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=815677 RYQ61_RS06255 WP_102567791.1 1202421..1203197(-) (recX) [Streptococcus intermedius strain XH2169]
ATGAAAATCACTAAAATTGAAAAGAAAAAGCGTCTCTATCTTTTAGAATTGGACGAAATTGACAAACTTTACATCACTGA
AGATACTATCGTTCACTTTATGTTATCAAAAGGCATGAATATCAGTGAGCAAGAATTAAAAGAAATTCAGGACTACGCAC
AGTTTTCTTACGGAAAAAATCTAGCTCTATATTATCTTTCTTTCAAGCAAAGAACTGTCAAAGAAGTGCGGGATTATTTG
ACAAAACACGAGATTTCCTTAGATACCATCGAGAAAGTGCTAACGATTCTCATAAAAGATAACTGGATAGATGACAGACA
ATATGCTTATTCCTTTATTCATTCCAATCTTCTATCTGGTGATAAAGGTGCTTTTGTCCTCAAGCAAAAATTGACTCAAA
AAGGTATCACAGCTCCTATTATTGATGAAGAATTATGCAAATTTGATTTTACAGAAGTAAGTCAAAAAGTCGCTGCAAAA
CTACTCCGCAACTATCAAAGCAAACTACCAAGTAAGGCCCTGCAGGATAAAATTCTTCAATCTATGATGAACAAAGGCTT
TTCCTATACCGAAGCTAAGGCAGCTTATCAAACCTTAGATATCAAAGAAGATGAGGAAACTCAGCAGAAATTACTGTACA
AAGAATTAGATAAGCAATACCACAAATATTCTAAAAAATATGGCGGATATGAATTAAAACAACGCCTCACCCAAGCACTC
GCTCGCAAAGGCTACGATTTTTCTGATATTGCTAGCGCTCTCAGAGAATATCTATAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.094

100

0.36