Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   RYQ61_RS05775 Genome accession   NZ_CP136799
Coordinates   1106779..1107825 (+) Length   348 a.a.
NCBI ID   WP_117276653.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101779..1112825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS05745 (RYQ61_05745) tsaE 1103166..1103606 (+) 441 WP_003073850.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RYQ61_RS05750 (RYQ61_05750) - 1103599..1104120 (+) 522 WP_003073848.1 GNAT family N-acetyltransferase -
  RYQ61_RS05755 (RYQ61_05755) brpA 1104128..1105231 (+) 1104 WP_003073846.1 biofilm formation/cell division transcriptional regulator BrpA -
  RYQ61_RS05760 (RYQ61_05760) - 1105275..1105562 (-) 288 WP_117276656.1 hypothetical protein -
  RYQ61_RS05765 (RYQ61_05765) - 1105572..1105982 (-) 411 WP_117276655.1 HIT family protein -
  RYQ61_RS05770 (RYQ61_05770) pptA 1106051..1106782 (+) 732 WP_117276654.1 ABC transporter ATP-binding protein Regulator
  RYQ61_RS05775 (RYQ61_05775) pptB 1106779..1107825 (+) 1047 WP_117276653.1 ABC transporter permease Regulator
  RYQ61_RS05780 (RYQ61_05780) ccrZ 1107876..1108673 (+) 798 WP_003073837.1 cell cycle regulator CcrZ -
  RYQ61_RS05785 (RYQ61_05785) trmB 1108670..1109305 (+) 636 WP_003078354.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RYQ61_RS05790 (RYQ61_05790) - 1109705..1110397 (+) 693 WP_125394215.1 VIT family protein -
  RYQ61_RS05795 (RYQ61_05795) rimP 1110609..1111097 (+) 489 WP_003070356.1 ribosome maturation factor RimP -
  RYQ61_RS05800 (RYQ61_05800) nusA 1111149..1112342 (+) 1194 WP_003078357.1 transcription termination factor NusA -
  RYQ61_RS05805 (RYQ61_05805) rnpM 1112353..1112649 (+) 297 WP_003070354.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 40815.20 Da        Isoelectric Point: 10.3580

>NTDB_id=815670 RYQ61_RS05775 WP_117276653.1 1106779..1107825(+) (pptB) [Streptococcus intermedius strain XH2169]
MKEVFQKRKQVFRNQCLKYSRYVFNDHFVLFLLVFIGFLAVQYSQLLRNFPKNHLPIILALAVLLVFLLPLGRIATYMEK
PDSLFLLVKEEELKSYLQKQMCSSYLLWSVFQTAILLLAAPLLLALGLPFWGWFILVFFMLIAKWFLFLKKSQRFYQGAG
INWGYLIDYEERRKQTILRFFALFTNVKGISNSVKRRAYLDSLTNILPKRQSTTWQNMFLRSYLRNGDFLALTMRLLFLS
LLGIGLLGQSWIAAVFVILLNYLLLFQLTALYNAFDYQYLTFLFPLEIGLKLKGVRQVIVLVGYSVLLVETIMALLFFQD
RVALLFMVGVTLLLYFFYLPVKLKSLVD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=815670 RYQ61_RS05775 WP_117276653.1 1106779..1107825(+) (pptB) [Streptococcus intermedius strain XH2169]
ATGAAAGAAGTGTTTCAAAAGCGCAAGCAAGTATTTCGCAATCAATGTTTGAAATATTCACGCTATGTTTTTAACGATCA
TTTTGTTCTATTTTTATTAGTTTTTATTGGCTTTTTAGCTGTTCAATATAGTCAACTGTTGCGAAATTTTCCTAAAAATC
ACCTGCCAATTATTCTTGCTTTAGCAGTTCTTTTGGTGTTCTTGTTGCCTTTGGGAAGAATTGCAACGTATATGGAAAAG
CCAGATAGTCTATTTTTGTTGGTCAAAGAAGAAGAATTAAAAAGTTATTTACAAAAACAAATGTGTTCATCTTATCTATT
ATGGAGTGTATTTCAAACGGCTATTCTATTACTAGCAGCGCCACTCCTTTTGGCGCTAGGATTACCATTTTGGGGATGGT
TTATTCTTGTATTTTTTATGTTAATAGCAAAATGGTTTCTATTTTTGAAAAAGAGCCAAAGATTTTATCAAGGAGCAGGC
ATAAATTGGGGCTATCTCATTGACTACGAAGAGAGACGAAAGCAGACAATCTTGCGTTTCTTTGCTCTCTTTACCAATGT
AAAAGGAATCTCCAATAGCGTGAAACGCCGAGCCTATCTTGATAGTTTGACAAATATTTTGCCAAAAAGGCAATCAACCA
CTTGGCAGAATATGTTTTTACGCTCTTATTTGCGAAATGGTGATTTTCTGGCTTTGACCATGCGGTTGCTATTTCTATCT
CTTTTAGGAATTGGCTTGCTCGGTCAATCTTGGATTGCGGCTGTTTTTGTGATACTGTTGAATTATCTTTTGCTATTTCA
ATTGACCGCTTTGTACAACGCTTTTGATTATCAATATTTGACATTCTTATTTCCTCTAGAAATCGGATTAAAGTTAAAGG
GTGTGAGACAAGTGATTGTTCTTGTTGGTTACAGTGTGCTGTTAGTTGAAACAATTATGGCGTTGCTATTTTTCCAAGAT
AGAGTTGCACTGCTTTTCATGGTAGGAGTTACACTATTGCTTTATTTTTTCTATTTACCAGTTAAATTAAAAAGTTTGGT
TGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(160-329)

Bacterial ABC transporter protein EcsB (EcsB)

(2-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.414

100

0.474
  pptB Streptococcus salivarius strain HSISS4

46.552

100

0.466