Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   RYQ61_RS02605 Genome accession   NZ_CP136799
Coordinates   516792..517118 (-) Length   108 a.a.
NCBI ID   WP_020999196.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511792..522118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS02590 (RYQ61_02590) glmS 512298..514112 (-) 1815 WP_021003253.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  RYQ61_RS02595 (RYQ61_02595) - 514502..515701 (-) 1200 WP_021003254.1 acetate kinase -
  RYQ61_RS02600 (RYQ61_02600) comGH 515748..516701 (-) 954 WP_102568323.1 class I SAM-dependent methyltransferase Machinery gene
  RYQ61_RS02605 (RYQ61_02605) comGG/cglG 516792..517118 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG Machinery gene
  RYQ61_RS02610 (RYQ61_02610) comGF/cglF 517099..517536 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  RYQ61_RS02615 (RYQ61_02615) comGE/cglE 517520..517813 (-) 294 WP_048785663.1 competence type IV pilus minor pilin ComGE Machinery gene
  RYQ61_RS02620 (RYQ61_02620) comGD 517785..518213 (-) 429 WP_037582814.1 competence type IV pilus minor pilin ComGD Machinery gene
  RYQ61_RS02625 (RYQ61_02625) comGC 518173..518490 (-) 318 WP_003073983.1 competence type IV pilus major pilin ComGC Machinery gene
  RYQ61_RS02630 (RYQ61_02630) comGB 518487..519509 (-) 1023 WP_172964131.1 competence type IV pilus assembly protein ComGB Machinery gene
  RYQ61_RS02635 (RYQ61_02635) comGA 519451..520392 (-) 942 WP_102568325.1 competence type IV pilus ATPase ComGA Machinery gene
  RYQ61_RS02640 (RYQ61_02640) - 520461..520826 (-) 366 WP_048785667.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12900.83 Da        Isoelectric Point: 10.6199

>NTDB_id=815635 RYQ61_RS02605 WP_020999196.1 516792..517118(-) (comGG/cglG) [Streptococcus intermedius strain XH2169]
MWKQKVKAGIMLHALFMTAVFSLLLQFYLHRQTASHRNFTLNRERLQAYAMAVIANEDSRHREFDKGHVQEQQGEKELTL
TVTMKTGRHYQFRFPFEKTKLTNDNRDK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=815635 RYQ61_RS02605 WP_020999196.1 516792..517118(-) (comGG/cglG) [Streptococcus intermedius strain XH2169]
GTGTGGAAACAAAAAGTTAAAGCAGGTATTATGCTCCATGCCCTTTTTATGACAGCTGTCTTTAGCTTGCTTTTGCAATT
TTATCTTCATCGTCAGACCGCTAGTCATAGAAATTTTACTCTAAATCGAGAACGACTACAGGCGTATGCAATGGCAGTTA
TCGCAAACGAAGATTCTAGACACAGAGAATTTGATAAAGGACATGTCCAAGAGCAACAAGGTGAGAAAGAGCTCACCCTG
ACAGTAACAATGAAGACGGGTCGCCATTATCAATTTCGTTTTCCGTTTGAGAAGACCAAACTAACCAATGACAATCGAGA
CAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

46.535

93.519

0.435
  comGG/cglG Streptococcus mitis SK321

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae Rx1

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae D39

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae R6

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae TIGR4

42.574

93.519

0.398