Detailed information NTG0815545

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: R1Y80_RS11330
• Genome accession: NZ_CP136798
• Coordinates: 2488856..2490154 (-)
• Length: 432 a.a.
• NCBI ID: WP_006124414.1
• Uniprot ID: A0ABM9GT83
• Organism: Streptomyces sp. JL1001
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2483856..2495154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R1Y80_RS11320 (R1Y80_11300)	-	2485033..2487654 (-)	2622	WP_100564176.1	valine--tRNA ligase	-
R1Y80_RS11325 (R1Y80_11305)	-	2487793..2488782 (+)	990	WP_100564174.1	hypothetical protein	-
R1Y80_RS11330 (R1Y80_11310)	clpX	2488856..2490154 (-)	1299	WP_006124414.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
R1Y80_RS11335 (R1Y80_11315)	clpP	2490312..2490995 (-)	684	WP_006124415.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R1Y80_RS11340 (R1Y80_11320)	-	2491078..2491683 (-)	606	WP_030708378.1	ATP-dependent Clp protease proteolytic subunit	-
R1Y80_RS11345 (R1Y80_11325)	tig	2491981..2493381 (-)	1401	WP_075266466.1	trigger factor	-
R1Y80_RS11360 (R1Y80_11340)	-	2493936..2494130 (-)	195	WP_006124418.1	hypothetical protein	-

Sequence

Protein

• Length: 432 a.a.
• Molecular weight: 47315.16 Da
• Isoelectric Point: 4.7838

>NTDB_id=815545 R1Y80_RS11330 WP_006124414.1 2488856..2490154(-) (clpX) [Streptomyces sp. JL1001]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGAGREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
PDVVRDNVNPTLVPREPRTIGKNDGGRHEKSA

Nucleotide

• Length: 1299 bp

>NTDB_id=815545 R1Y80_RS11330 WP_006124414.1 2488856..2490154(-) (clpX) [Streptomyces sp. JL1001]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCGGAGACGA
GCGAGGTGCGCTGGGAAGAGCTTCCCAAGCCCCGCGAGATCTACGAGTTCCTGGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGGGAGAACGGCGGCGGCGCCGGTCG
CGAGGACGCGATCGAGCTCGCCAAGTCGAACATCCTCCTGCTGGGCCCCACCGGTTCCGGCAAGACGCTTCTCGCCCAGA
CGCTGGCCCGCATGCTCAACGTCCCGTTCGCGATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCCTCGATCACCCGCGATGTCTCCGGCGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCCGTTCCGCCGCAGGGCGGACGCAAGCACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCTCCGGCCTGGAGAAGATCATCGAGTCCCGGGCCGGCGC
CAAGGGCATCGGCTTCGGTGCCACGATCCGCTCCAAGCTGGAGATCCAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGTCTCCCCGTGCTGACCTCGGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCCCTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGTGAGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCCAGACCGGCGCGCGCGGCCTGC
GGGCGATCATGGAGGAAGTCCTCCAGTCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTCGTCATCACG
CCCGACGTCGTCCGCGACAACGTCAACCCGACGCTGGTCCCGCGCGAGCCGCGCACGATCGGCAAGAACGACGGCGGCCG
CCACGAGAAGTCCGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.056	0.593
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.398	95.37	0.509