Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R1Y80_RS10080 Genome accession   NZ_CP136798
Coordinates   2195739..2196428 (+) Length   229 a.a.
NCBI ID   WP_032761924.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2190739..2201428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS10060 (R1Y80_10040) - 2191098..2191751 (+) 654 WP_128806389.1 TetR family transcriptional regulator -
  R1Y80_RS10065 (R1Y80_10045) - 2191938..2193146 (+) 1209 WP_354596866.1 alpha/beta hydrolase -
  R1Y80_RS10070 (R1Y80_10050) - 2193233..2194201 (+) 969 WP_128806388.1 DUF4429 domain-containing protein -
  R1Y80_RS10075 (R1Y80_10055) - 2194366..2195742 (+) 1377 WP_100560457.1 sensor histidine kinase -
  R1Y80_RS10080 (R1Y80_10060) vraR 2195739..2196428 (+) 690 WP_032761924.1 response regulator transcription factor Regulator
  R1Y80_RS10085 (R1Y80_10065) - 2196569..2197702 (+) 1134 WP_354596867.1 alpha/beta hydrolase -
  R1Y80_RS10090 (R1Y80_10070) - 2197699..2198931 (+) 1233 WP_100560459.1 acyltransferase -
  R1Y80_RS10095 (R1Y80_10075) - 2198989..2200005 (-) 1017 WP_354596868.1 aldo/keto reductase -
  R1Y80_RS10100 (R1Y80_10080) - 2200002..2200409 (-) 408 WP_032762277.1 MerR family transcriptional regulator -
  R1Y80_RS10105 (R1Y80_10085) - 2200568..2200828 (+) 261 WP_088574317.1 small hydrophilic protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24247.90 Da        Isoelectric Point: 5.0891

>NTDB_id=815542 R1Y80_RS10080 WP_032761924.1 2195739..2196428(+) (vraR) [Streptomyces sp. JL1001]
MTIRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAADGRQGVDVSRNQHPDVVLMDVRMPEMDGLAAARELLNPPAGVVHR
PKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPAGATRTGQALRLN
GLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLVTPGDAGA

Nucleotide


Download         Length: 690 bp        

>NTDB_id=815542 R1Y80_RS10080 WP_032761924.1 2195739..2196428(+) (vraR) [Streptomyces sp. JL1001]
GTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCCGGGTTCGCGGCGCTGCTGGCGGCGCAGAGCGA
CATCGACGTGGTGGGCGAGGCGGCGGACGGCCGCCAGGGCGTGGACGTCAGCCGCAACCAGCATCCCGACGTGGTCCTGA
TGGACGTGCGGATGCCGGAGATGGACGGACTGGCCGCCGCGCGCGAGCTGTTGAACCCGCCGGCGGGGGTGGTGCACCGG
CCGAAGGTCCTGATGCTGACGACGTTCGACGTGGACGACTACGTGTACGAGGCGCTGCGCGCCGGGGCGTCCGGCTTCCT
GCTGAAGGACGCGCCGCCCGCCGATCTGATCGCGGCGGTACGGGTGGTGGCGGCCGGGGACGCGCTGCTCGCGCCCTCGG
TGACCCGGCGGCTGATCGCGGACTTCGCGGCGCAGCGGCCCGCCGGGGCGACGCGCACCGGGCAGGCGCTCCGGCTCAAC
GGGCTGACCCCGCGGGAGAGCGAGGTGCTGGAGCTGATCGCCCGGGGTCTGTCGAACCAGGAGATCGCGGGGCGTCTGGT
GCTGGCCGAGCAGACCGTCAAGACGCACATCGGGCGGGTGCTGGCCAAACTGGACCTGCGGGACCGGGCCCAGGCGGTCA
TCTTCGCGTACGAGTCGGGTCTGGTGACGCCGGGGGACGCGGGGGCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(162-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.541

96.943

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

37.118

100

0.371