Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R1Y80_RS03760 Genome accession   NZ_CP136798
Coordinates   822553..823203 (+) Length   216 a.a.
NCBI ID   WP_032778572.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 817553..828203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS03740 (R1Y80_03725) mug 818914..819501 (+) 588 WP_354596398.1 G/U mismatch-specific DNA glycosylase -
  R1Y80_RS03745 (R1Y80_03730) - 819607..820344 (-) 738 WP_354596399.1 ABC transporter permease -
  R1Y80_RS03750 (R1Y80_03735) - 820347..821279 (-) 933 WP_100564418.1 ATP-binding cassette domain-containing protein -
  R1Y80_RS03755 (R1Y80_03740) - 821388..822581 (+) 1194 WP_100564416.1 histidine kinase -
  R1Y80_RS03760 (R1Y80_03745) vraR 822553..823203 (+) 651 WP_032778572.1 response regulator transcription factor Regulator
  R1Y80_RS03765 (R1Y80_03750) - 823304..824461 (+) 1158 WP_006122919.1 ROK family transcriptional regulator -
  R1Y80_RS03770 (R1Y80_03755) - 824568..825338 (-) 771 WP_100564414.1 GntR family transcriptional regulator -
  R1Y80_RS03775 (R1Y80_03760) - 825624..826508 (-) 885 WP_100564412.1 RNA polymerase sigma-70 factor -
  R1Y80_RS03780 (R1Y80_03765) - 826631..827461 (+) 831 WP_128807977.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23190.85 Da        Isoelectric Point: 4.8230

>NTDB_id=815532 R1Y80_RS03760 WP_032778572.1 822553..823203(+) (vraR) [Streptomyces sp. JL1001]
MPFTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGAAVIPLVNRLRPDVVAMDVRMPLMDGIEATRLVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRAKPSEIVHAVRLVAEGESLLFPVAVRQLASEYGTDRARQALDRAALTDREAAV
LRLMARGMSNAEIAADLVVGIQTVKSHVSSVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=815532 R1Y80_RS03760 WP_032778572.1 822553..823203(+) (vraR) [Streptomyces sp. JL1001]
ATGCCCTTCACCGTTCTTCTGGTCGATGACGAGCCCCTGGTGCGCGCCGGTCTGCGTGCCGTGTTGGAGGCCCAGCCCGA
TATCGAGGTGGTGGGTGAGGCGGCGGACGGCGCCGCGGTGATCCCTCTGGTGAACCGGTTGCGGCCCGATGTGGTGGCGA
TGGATGTGCGGATGCCTCTGATGGATGGAATCGAGGCGACCCGGCTGGTGCTGCGGACGGTGCCGGATCCCCCGAAGATC
CTGGTGGTGACGACGTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGGGCGGGGGCGGACGGCTTCCTGCTGAAGCG
GGCCAAGCCGTCCGAGATCGTGCACGCCGTACGTCTGGTGGCCGAGGGGGAATCACTGCTGTTCCCGGTGGCGGTCCGGC
AGCTCGCCTCCGAGTACGGGACGGACAGGGCCCGGCAGGCCCTCGACCGGGCCGCGCTCACCGACCGGGAGGCGGCGGTG
CTCCGGCTGATGGCCCGAGGTATGTCGAACGCGGAGATCGCGGCCGACCTCGTCGTCGGGATCCAGACGGTGAAGTCCCA
TGTCAGCTCGGTCCTGGCGAAGTTGGGTGCACGGGACCGTACGCAGGCGGTCATCGCCGCCTACGAGTCCGGATTCGTCG
CTCCGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.784

98.611

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

36.323

100

0.375