Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QC826_RS15105 Genome accession   NZ_CP122407
Coordinates   3340936..3343272 (-) Length   778 a.a.
NCBI ID   WP_279766318.1    Uniprot ID   -
Organism   Rugamonas sp. DEMB1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3335936..3348272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC826_RS15090 (QC826_15090) - 3336711..3338305 (+) 1595 Protein_2986 methyl-accepting chemotaxis protein -
  QC826_RS15095 (QC826_15095) - 3338356..3338682 (-) 327 WP_093390101.1 hypothetical protein -
  QC826_RS15100 (QC826_15100) - 3338967..3340754 (-) 1788 WP_279766317.1 DUF6345 domain-containing protein -
  QC826_RS15105 (QC826_15105) comA 3340936..3343272 (-) 2337 WP_279766318.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QC826_RS15110 (QC826_15110) - 3343624..3345477 (-) 1854 WP_279766319.1 glycosyltransferase 87 family protein -
  QC826_RS15115 (QC826_15115) - 3345474..3346448 (-) 975 WP_279766320.1 glycosyltransferase -
  QC826_RS15120 (QC826_15120) - 3346687..3347799 (+) 1113 WP_279766322.1 hypothetical protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 82970.59 Da        Isoelectric Point: 10.3890

>NTDB_id=815475 QC826_RS15105 WP_279766318.1 3340936..3343272(-) (comA) [Rugamonas sp. DEMB1]
MRRLLALAAGLMLGVGWAALLAARALAPQLAAADEGRDLTLVGVVDNLPYRFSDGVRFQFKVESVADGTAVPPRVVLSWY
AGQRGVVNEVGVVRPGERWRLTVRLQRPHGNANPHGFDYEVWLLEQGVRATGYVRPARGNRRLDGFVPSVGNVVERCRDA
LRERILGALPGQEYANVLVALVVGDQRGIAQSDWQVFNRTGVGHLISISGLHITMVAGLAALAVSALWRRSFFTGAQLPL
LLPAQKVAAITGAGVALLYVLLAGFGVPAQRTLYMLAVVAAALWLDRITSVSYVLCAALGLVVLLDPWAVLWPGFWLSFG
AVALILYATVGRTANSGGATAPATGASEPPTASASGSASAPARAKAQAQMRARRVWQALRLGAHTQYVVTCGLVPLTMLL
FAQVSLVSPLANALAIPLVSLVVTPLALLGSVLPMALAVPVLGLAHWLVRALAACLQWFSGWELAVWCAPTPPWWLFGWA
MLGTLWLLAPRGWPGRWLGLLSWIPLLTAPPASPPAGQLWVTALDVGQGMALLVETAGHRLLYDTGPAYSPESNGGNRVI
LPYLRARGIGQLDGLIVSHSDIDHAGGALAVLGGVRVGWLLSSLSASHAVVRAAPRHGPCVAGQGWSWDGVRFEILHPLA
DSYADAALKPNARGCTLRISAGGRAILLAADIEAAQEAALLARAPERLRADVLLAPHHGSGTSSTLPFLLAVRPELALFQ
VGYRNRYRHPKAEVFERYGALGVRRLRSDEAGAVTLVFGAGIDVTAYRQRHARYWYAR

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=815475 QC826_RS15105 WP_279766318.1 3340936..3343272(-) (comA) [Rugamonas sp. DEMB1]
TTGCGCCGCCTGTTGGCGCTGGCCGCCGGCCTCATGCTCGGTGTCGGCTGGGCCGCGTTGCTGGCCGCGCGCGCGCTGGC
GCCCCAGTTGGCCGCCGCCGACGAGGGGCGCGACCTGACGCTGGTCGGCGTGGTCGACAATCTGCCCTACCGTTTCAGCG
ACGGGGTGCGCTTCCAGTTCAAGGTGGAGAGTGTGGCCGACGGCACGGCGGTGCCGCCGCGCGTGGTCTTGTCGTGGTAC
GCCGGCCAGCGCGGCGTGGTCAACGAGGTCGGCGTGGTGCGGCCGGGCGAGCGCTGGCGGCTGACGGTGCGCCTGCAACG
CCCGCACGGCAACGCCAACCCGCATGGCTTCGATTACGAGGTGTGGCTGCTGGAGCAGGGCGTGCGCGCCACCGGCTATG
TGCGGCCGGCGCGCGGCAACCGGCGGCTGGATGGCTTTGTGCCCAGCGTCGGCAACGTGGTCGAGCGCTGCCGCGACGCG
CTGCGCGAGCGCATCCTGGGTGCCTTGCCGGGGCAGGAATACGCCAACGTGCTGGTGGCGTTGGTGGTGGGCGACCAGCG
CGGCATTGCCCAGTCGGACTGGCAGGTGTTCAACCGGACGGGTGTGGGTCACCTCATTTCCATTTCAGGTTTACATATTA
CGATGGTCGCCGGGCTGGCCGCGCTGGCCGTCTCGGCCTTGTGGCGGCGCTCCTTCTTCACCGGCGCGCAACTGCCGCTG
CTGCTGCCGGCGCAGAAGGTGGCGGCGATCACCGGCGCCGGTGTCGCGCTGCTGTACGTGCTGCTGGCCGGCTTTGGCGT
GCCGGCCCAGCGCACCTTGTACATGTTGGCGGTGGTGGCCGCCGCGTTGTGGCTGGACCGTATCACCAGCGTGTCTTACG
TGCTGTGTGCTGCGCTCGGGCTGGTGGTGCTGCTCGACCCGTGGGCCGTGCTGTGGCCGGGGTTTTGGCTGTCGTTCGGC
GCGGTGGCGCTGATTCTGTACGCGACCGTGGGTCGCACCGCCAACTCCGGTGGAGCGACGGCCCCTGCCACTGGCGCGTC
CGAGCCTCCTACAGCGTCCGCTTCCGGCTCCGCCTCCGCACCCGCGCGCGCGAAGGCGCAGGCGCAGATGCGGGCGCGGC
GCGTATGGCAGGCGCTGCGTTTGGGCGCGCACACGCAATACGTGGTCACCTGCGGCCTGGTGCCGTTGACGATGCTGCTG
TTCGCCCAGGTGTCGCTGGTCAGTCCGTTGGCGAACGCGCTGGCGATCCCATTGGTGAGCCTGGTGGTGACGCCGCTGGC
GCTGCTGGGCAGCGTACTGCCGATGGCCTTGGCCGTGCCGGTGCTGGGCCTGGCGCATTGGCTGGTGCGCGCGCTGGCGG
CCTGCCTGCAATGGTTCAGCGGCTGGGAACTGGCGGTGTGGTGCGCGCCGACGCCGCCCTGGTGGCTGTTCGGCTGGGCC
ATGCTCGGCACCTTGTGGCTGCTGGCGCCGCGCGGTTGGCCGGGCCGCTGGCTCGGGCTGCTGAGCTGGATTCCGCTGTT
GACGGCGCCGCCGGCGAGCCCGCCCGCCGGCCAGCTGTGGGTCACCGCGCTCGACGTCGGCCAAGGCATGGCGCTGCTGG
TCGAGACGGCCGGCCACCGCCTGCTGTACGACACGGGGCCGGCGTATTCGCCCGAGTCGAACGGTGGCAACCGGGTGATC
CTGCCGTATCTGCGGGCGCGCGGCATCGGCCAGTTGGACGGCCTGATCGTCAGCCACAGCGACATCGACCATGCCGGCGG
CGCCTTGGCGGTGCTGGGCGGCGTGCGGGTGGGCTGGTTGCTGTCCTCGCTGTCCGCCTCCCACGCCGTGGTGCGGGCGG
CGCCGCGCCACGGGCCGTGCGTGGCGGGGCAGGGCTGGAGCTGGGACGGCGTGCGCTTCGAGATCTTGCATCCGCTGGCC
GACAGCTACGCCGACGCCGCGCTCAAGCCGAACGCGCGCGGCTGCACGCTGCGCATCAGCGCCGGCGGCCGCGCCATCCT
GCTGGCGGCGGACATCGAGGCGGCGCAGGAGGCGGCGCTGCTGGCGCGCGCGCCGGAGCGGCTGCGCGCCGACGTGCTGC
TGGCGCCGCACCACGGCAGCGGCACCTCGTCCACGCTGCCCTTCCTGTTGGCGGTGCGGCCCGAGCTGGCGCTGTTCCAG
GTCGGCTACCGCAACCGCTACCGCCATCCCAAGGCCGAGGTGTTCGAGCGCTACGGCGCGCTGGGCGTGCGGCGTCTGCG
CAGCGACGAGGCCGGCGCCGTCACGCTCGTGTTCGGCGCCGGCATCGATGTGACCGCCTACCGCCAGCGGCACGCGCGCT
ACTGGTACGCGCGCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(181-492)

Domain of unknown function (DUF4131) (DUF4131)

(2-137)

Metallo-beta-lactamase superfamily (Lactamase_B)

(525-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.139

100

0.487
  comA Pseudomonas stutzeri DSM 10701

37.161

99.614

0.37