Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QC826_RS02675 Genome accession   NZ_CP122407
Coordinates   578531..580033 (+) Length   500 a.a.
NCBI ID   WP_279764286.1    Uniprot ID   -
Organism   Rugamonas sp. DEMB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 573531..585033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC826_RS02650 (QC826_02650) - 573872..574711 (+) 840 WP_279764283.1 ABC transporter permease -
  QC826_RS02655 (QC826_02655) - 574708..575505 (+) 798 WP_279764284.1 ABC transporter ATP-binding protein -
  QC826_RS02660 (QC826_02660) - 575693..576496 (+) 804 WP_099418595.1 inner membrane protein YpjD -
  QC826_RS02665 (QC826_02665) - 576493..576765 (+) 273 WP_279764285.1 PP0621 family protein -
  QC826_RS31520 - 577383..577439 (+) 57 Protein_527 hypothetical protein -
  QC826_RS31165 - 577945..578292 (+) 348 Protein_528 sensor histidine kinase -
  QC826_RS31170 - 578353..578520 (+) 168 WP_313872905.1 hypothetical protein -
  QC826_RS02675 (QC826_02675) pilR 578531..580033 (+) 1503 WP_279764286.1 sigma-54-dependent transcriptional regulator Regulator
  QC826_RS02680 (QC826_02680) ampD 580102..580767 (+) 666 WP_279764287.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QC826_RS02685 (QC826_02685) - 581046..583975 (+) 2930 Protein_532 ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53278.22 Da        Isoelectric Point: 5.2430

>NTDB_id=815469 QC826_RS02675 WP_279764286.1 578531..580033(+) (pilR) [Rugamonas sp. DEMB1]
MTAVRACPRVLVVDDEADLRELLEITLVRMGLDVDSAATLAQARALLPEHDYALVLTDMRLPDGLGLELVREVVAAYKNT
PIAVVTAFGSADNAVVALKAGAFDYVSKPVALDQLRLMVQSALRLNAPAAEAPAPPAASRLKGDSAVIQALRAQIARLAR
SMAPIAIHGESGSGKELAAREIHAQSSRAGKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAAEERDGFFQAANGGTLLLD
EVADLPLAMQVKLLRAIQERRVRKLGATAEEPVDVRIISATHQDLAQCVESGRFRQGLFYRLNVIELQLPPLRERLDDLG
PLTDAILARLGSFAQRVVLAPQVLEALRGYAFPGNVRELENILERALAFSDDGVIEVADLALKGARPAEGGAQAATAGAP
PAGPAAAHTQVQAVQTAQSAQSAQLGAPPCAAEPAAPPLPPLEALPASLPDYLHQIERDIIMRALAQTQYNRTQAAQLLG
ISFRQLRYQMQKLGIQEPET

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=815469 QC826_RS02675 WP_279764286.1 578531..580033(+) (pilR) [Rugamonas sp. DEMB1]
ATGACCGCTGTCCGTGCCTGTCCCCGCGTCCTGGTTGTCGACGACGAGGCGGACCTGCGCGAGCTGCTCGAGATCACCCT
GGTGCGCATGGGCCTCGACGTCGACAGCGCCGCCACCCTGGCGCAGGCGCGCGCCCTGCTGCCCGAGCACGACTACGCGC
TGGTGCTGACCGACATGCGCCTGCCCGACGGCCTCGGCCTGGAGCTGGTGCGCGAGGTGGTGGCCGCCTACAAGAACACC
CCGATCGCCGTCGTCACCGCCTTCGGCAGCGCCGACAACGCCGTCGTCGCCCTCAAGGCCGGCGCCTTCGACTACGTCTC
CAAGCCGGTGGCGCTGGACCAGCTGCGCCTGATGGTGCAGTCGGCGCTGCGCCTGAACGCGCCGGCCGCCGAGGCGCCGG
CGCCGCCGGCCGCCAGTCGGCTGAAGGGCGACTCGGCGGTGATCCAGGCGCTGCGCGCGCAGATCGCCCGGCTGGCCCGC
TCGATGGCGCCGATCGCCATCCACGGCGAGTCCGGCAGCGGCAAGGAGCTGGCCGCGCGCGAGATCCACGCGCAAAGCTC
GCGCGCCGGCAAGCCCTTCGTCGCCGTCAACTGCGGCGCCATCCCCGAGGCGCTGATGGAGGCCGAGTTCTTCGGCTACC
GCAAGGGCGCCTTCACCGGCGCCGCCGAGGAGCGCGACGGCTTCTTCCAGGCCGCCAACGGCGGCACCCTGCTGCTCGAC
GAGGTGGCCGACCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGCGGCGCGTGCGCAAGCTCGGCGC
CACCGCCGAGGAGCCGGTCGACGTGCGCATCATCAGCGCCACCCACCAGGACCTGGCGCAGTGCGTCGAGAGCGGGCGCT
TCCGCCAGGGCCTGTTCTACCGCCTCAACGTCATCGAGCTGCAACTGCCGCCGCTGCGCGAGCGGCTCGACGACCTGGGG
CCGCTGACCGACGCCATCCTGGCCCGCCTGGGCAGCTTCGCCCAGCGCGTGGTGCTGGCGCCGCAGGTGCTCGAGGCGCT
GCGCGGCTACGCCTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAGCGCGCGCTGGCCTTCTCCGACGACGGCG
TCATCGAGGTGGCCGACCTGGCGCTGAAGGGCGCGCGGCCGGCCGAGGGCGGCGCCCAGGCCGCCACCGCCGGCGCGCCG
CCCGCCGGCCCCGCCGCCGCGCACACCCAAGTCCAAGCCGTCCAGACGGCCCAATCCGCCCAATCGGCCCAGCTGGGCGC
GCCGCCGTGCGCCGCCGAACCGGCCGCGCCGCCGCTGCCTCCGCTGGAGGCGCTGCCGGCCAGCCTGCCCGACTACCTGC
ACCAGATCGAACGCGACATCATCATGCGCGCCCTGGCGCAGACCCAGTACAACCGCACCCAGGCGGCCCAGCTGCTCGGC
ATCAGCTTCCGCCAGCTGCGCTACCAGATGCAAAAGCTGGGCATCCAGGAGCCGGAGACCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(453-493)

Response regulator receiver domain (Response_reg)

(10-119)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.935

98.2

0.51
  pilR Acinetobacter baumannii strain A118

44.177

99.6

0.44