Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   R0492_RS16895 Genome accession   NZ_CP136649
Coordinates   3222959..3223840 (-) Length   293 a.a.
NCBI ID   WP_003184856.1    Uniprot ID   -
Organism   Bacillus licheniformis strain NXU98     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3217959..3228840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS16860 - 3218168..3218644 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  R0492_RS16865 - 3218644..3218928 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  R0492_RS16870 mnhG 3218912..3219286 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  R0492_RS16875 - 3219326..3219715 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  R0492_RS16880 comA 3219732..3220370 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  R0492_RS16885 comP 3220457..3222763 (-) 2307 WP_161658321.1 histidine kinase Regulator
  R0492_RS16890 comX 3222786..3222950 (-) 165 WP_003184853.1 competence pheromone ComX -
  R0492_RS16895 comQ 3222959..3223840 (-) 882 WP_003184856.1 polyprenyl synthetase family protein Regulator
  R0492_RS16900 - 3224109..3225271 (+) 1163 WP_085959889.1 IS3 family transposase -
  R0492_RS16905 degQ 3225317..3225457 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  R0492_RS16910 - 3225943..3226290 (+) 348 WP_009329512.1 hypothetical protein -
  R0492_RS16915 - 3226333..3227553 (-) 1221 WP_003184864.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33459.20 Da        Isoelectric Point: 4.6798

>NTDB_id=815420 R0492_RS16895 WP_003184856.1 3222959..3223840(-) (comQ) [Bacillus licheniformis strain NXU98]
MNHFIDLEIPNADLNRTLHAFLDAKDQLHFSELAFYHYQSFGGTDTDAAETLGAGIELLILAFDIFDDLEDEDSPDEPWM
KINRSVAMNAATALYTISIKVIGSVSNDSCFFNKMMEYILQSSQGQHDDLSDKPVTENECLDMIKRKSGSLTALSCVLGT
MLATGKFNPTVESYALQLGIALQIENDYRGLFYNSKSDIVKNKRTLAYLYLKRKFNQSSIDLLKVFENEDKIADIEIKCY
KEKLKEAGVPQYMYVMIQLAIQKFRRGIAELELKQEEKKWLASFLLNKFDKED

Nucleotide


Download         Length: 882 bp        

>NTDB_id=815420 R0492_RS16895 WP_003184856.1 3222959..3223840(-) (comQ) [Bacillus licheniformis strain NXU98]
ATGAATCATTTTATAGACCTTGAGATTCCCAATGCGGACTTAAATCGGACGCTGCACGCTTTTCTAGATGCAAAGGACCA
GTTGCATTTCAGCGAGCTTGCTTTTTATCATTACCAAAGTTTCGGCGGCACGGACACCGATGCGGCAGAAACCCTTGGAG
CAGGCATTGAACTCTTGATTCTTGCGTTTGATATATTCGATGATTTAGAGGATGAAGACAGCCCCGATGAACCTTGGATG
AAAATCAACCGTTCAGTCGCAATGAATGCGGCGACTGCGCTTTATACAATAAGCATTAAAGTGATCGGTTCGGTGTCGAA
CGATTCTTGCTTTTTTAATAAAATGATGGAATACATATTGCAATCTTCACAAGGGCAACATGATGATCTTAGTGATAAGC
CGGTTACGGAAAACGAATGCCTTGATATGATCAAGCGCAAATCTGGTTCATTGACAGCTCTTTCATGTGTTTTGGGAACC
ATGCTCGCTACAGGTAAATTTAATCCTACTGTTGAATCTTATGCACTCCAATTGGGCATTGCTTTACAGATCGAAAATGA
TTATAGAGGTCTTTTCTATAATTCAAAAAGCGATATTGTGAAAAATAAGCGAACACTTGCTTATTTATACTTGAAAAGAA
AATTTAATCAATCCTCAATTGATTTATTAAAAGTATTTGAAAATGAGGATAAAATTGCCGATATAGAAATAAAATGTTAT
AAAGAAAAATTGAAGGAAGCTGGTGTTCCCCAATATATGTATGTCATGATTCAGCTTGCTATTCAGAAATTTAGAAGAGG
AATAGCTGAGTTAGAGCTGAAACAAGAGGAAAAGAAATGGCTTGCTTCTTTCCTTTTGAACAAGTTTGATAAGGAGGATT
AA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(41-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

44.637

98.635

0.44