Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QCD67_RS13915 Genome accession   NZ_CP122401
Coordinates   2842264..2842788 (-) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter roggenkampii strain EOBSR_19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2837264..2847788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCD67_RS13890 (QCD67_13890) - 2837783..2838454 (-) 672 WP_039024674.1 glutathione S-transferase -
  QCD67_RS13895 (QCD67_13895) soxR 2838829..2839287 (-) 459 WP_008503388.1 redox-sensitive transcriptional activator SoxR -
  QCD67_RS13900 (QCD67_13900) soxS 2839386..2839712 (+) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  QCD67_RS13905 (QCD67_13905) - 2839719..2841284 (-) 1566 WP_023293514.1 EAL domain-containing protein -
  QCD67_RS13910 (QCD67_13910) - 2841920..2842201 (+) 282 WP_008503385.1 YjcB family protein -
  QCD67_RS13915 (QCD67_13915) ssb 2842264..2842788 (-) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QCD67_RS13920 (QCD67_13920) uvrA 2843040..2845861 (+) 2822 Protein_2724 excinuclease ABC subunit UvrA -
  QCD67_RS13925 (QCD67_13925) - 2845865..2846218 (-) 354 WP_008503382.1 MmcQ/YjbR family DNA-binding protein -
  QCD67_RS13930 (QCD67_13930) - 2846221..2846637 (-) 417 WP_206805862.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QCD67_RS13935 (QCD67_13935) aphA 2846751..2847464 (-) 714 WP_206805861.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=815420 QCD67_RS13915 WP_008503384.1 2842264..2842788(-) (ssb) [Enterobacter roggenkampii strain EOBSR_19]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=815420 QCD67_RS13915 WP_008503384.1 2842264..2842788(-) (ssb) [Enterobacter roggenkampii strain EOBSR_19]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTGCTGAGAAGTACACCACTGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGCTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCGCCG
TCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368