Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QCD67_RS07600 Genome accession   NZ_CP122401
Coordinates   1504778..1505404 (-) Length   208 a.a.
NCBI ID   WP_048962070.1    Uniprot ID   A0AAU9BLQ2
Organism   Enterobacter roggenkampii strain EOBSR_19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499778..1510404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCD67_RS07585 (QCD67_07585) helD 1500015..1502069 (-) 2055 WP_047071934.1 DNA helicase IV -
  QCD67_RS07590 (QCD67_07590) - 1502193..1502639 (+) 447 WP_023343701.1 YccF domain-containing protein -
  QCD67_RS07595 (QCD67_07595) yccS 1502659..1504821 (+) 2163 WP_206804642.1 YccS family putative transporter -
  QCD67_RS07600 (QCD67_07600) sxy/tfoX 1504778..1505404 (-) 627 WP_048962070.1 TfoX/Sxy family DNA transformation protein Regulator
  QCD67_RS07605 (QCD67_07605) sulA 1505622..1506131 (+) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  QCD67_RS07610 (QCD67_07610) ompA 1506486..1507541 (+) 1056 WP_008499928.1 porin OmpA -
  QCD67_RS07615 (QCD67_07615) matP 1507607..1508059 (-) 453 WP_008499929.1 macrodomain Ter protein MatP -
  QCD67_RS07620 (QCD67_07620) - 1508246..1510006 (+) 1761 WP_279795137.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23901.49 Da        Isoelectric Point: 9.6030

>NTDB_id=815418 QCD67_RS07600 WP_048962070.1 1504778..1505404(-) (sxy/tfoX) [Enterobacter roggenkampii strain EOBSR_19]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLYEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=815418 QCD67_RS07600 WP_048962070.1 1504778..1505404(-) (sxy/tfoX) [Enterobacter roggenkampii strain EOBSR_19]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCAGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
ATGAAGCTGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCGCTCCCGGCAGGTAT
CCGCCGGGAACTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567