Detailed information NTG0815377

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QCH01_RS03855
• Genome accession: NZ_CP122398
• Coordinates: 827110..827907 (-)
• Length: 265 a.a.
• NCBI ID: WP_100663294.1
• Uniprot ID: -
• Organism: Raoultella ornithinolytica strain MF1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 822110..832907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCH01_RS03835 (QCH01_03815)	dksA	822715..823170 (-)	456	WP_004858018.1	RNA polymerase-binding protein DksA	-
QCH01_RS03840 (QCH01_03820)	sfsA	823335..824051 (-)	717	WP_004858020.1	DNA/RNA nuclease SfsA	-
QCH01_RS03845 (QCH01_03825)	thpR	824051..824587 (-)	537	WP_004858022.1	RNA 2',3'-cyclic phosphodiesterase	-
QCH01_RS03850 (QCH01_03830)	hrpB	824660..827089 (+)	2430	WP_064359573.1	ATP-dependent helicase HrpB	-
QCH01_RS03855 (QCH01_03835)	pilD	827110..827907 (-)	798	WP_100663294.1	A24 family peptidase	Machinery gene
QCH01_RS03860 (QCH01_03840)	-	827922..828662 (-)	741	WP_100663293.1	type II secretion system protein N	-
QCH01_RS03865 (QCH01_03845)	gspM	828652..829146 (-)	495	WP_100663292.1	type II secretion system protein GspM	-
QCH01_RS03870 (QCH01_03850)	gspL	829139..830341 (-)	1203	WP_015585123.1	type II secretion system protein GspL	-
QCH01_RS03875 (QCH01_03855)	gspK	830328..831314 (-)	987	WP_048024055.1	type II secretion system minor pseudopilin GspK	-
QCH01_RS03880 (QCH01_03860)	gspJ	831311..831895 (-)	585	WP_015585121.1	type II secretion system minor pseudopilin GspJ	-
QCH01_RS03885 (QCH01_03865)	gspI	831907..832272 (-)	366	WP_004858044.1	type II secretion system minor pseudopilin GspI	-
QCH01_RS03890 (QCH01_03870)	gspH	832269..832754 (-)	486	WP_233470822.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29315.95 Da
• Isoelectric Point: 8.4762

>NTDB_id=815377 QCH01_RS03855 WP_100663294.1 827110..827907(-) (pilD) [Raoultella ornithinolytica strain MF1]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFVLAGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSSLFLWTQTL

Nucleotide

• Length: 798 bp

>NTDB_id=815377 QCH01_RS03855 WP_100663294.1 827110..827907(-) (pilD) [Raoultella ornithinolytica strain MF1]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCCTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCACTGACGGAACTGGCCAGCGGACTGCTCTTTGTGTT
GGCCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCAGCCTGTTTCTGTGGACTCAGACGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (122-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.529	100	0.498
pilD	Vibrio campbellii strain DS40M4	46.183	98.868	0.457
pilD	Neisseria gonorrhoeae MS11	46.275	96.226	0.445
pilD	Acinetobacter baumannii D1279779	44.574	97.358	0.434
pilD	Acinetobacter nosocomialis M2	44.186	97.358	0.43