Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   R0492_RS10300 Genome accession   NZ_CP136649
Coordinates   1991208..1991579 (+) Length   123 a.a.
NCBI ID   WP_003182242.1    Uniprot ID   -
Organism   Bacillus licheniformis strain NXU98     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1986208..1996579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0492_RS10270 - 1986636..1986869 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  R0492_RS10275 recP/tkt 1987036..1989039 (+) 2004 WP_095240068.1 transketolase Machinery gene
  R0492_RS10280 sirA 1989194..1989631 (+) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  R0492_RS10285 - 1989716..1989934 (+) 219 WP_003182236.1 YneF family protein -
  R0492_RS10290 - 1990015..1990176 (-) 162 WP_202604361.1 aspartyl-phosphate phosphatase Spo0E family protein -
  R0492_RS10295 - 1990419..1991126 (+) 708 WP_003182240.1 cytochrome c biogenesis protein CcdA -
  R0492_RS10300 spo0A 1991208..1991579 (+) 372 WP_003182242.1 response regulator Regulator
  R0492_RS10305 - 1991653..1992147 (+) 495 WP_085959522.1 CcdC family protein -
  R0492_RS10310 - 1992183..1992611 (-) 429 WP_003182245.1 DUF2621 domain-containing protein -
  R0492_RS10315 - 1992816..1993223 (-) 408 WP_003182248.1 Hsp20/alpha crystallin family protein -
  R0492_RS10320 - 1993359..1993505 (-) 147 WP_003182250.1 small acid-soluble spore protein P -
  R0492_RS10325 sspO 1993547..1993693 (-) 147 WP_003182252.1 small acid-soluble spore protein O -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13923.42 Da        Isoelectric Point: 4.6948

>NTDB_id=815376 R0492_RS10300 WP_003182242.1 1991208..1991579(+) (spo0A) [Bacillus licheniformis strain NXU98]
MTRVLIVDDAKFMRDKIREILETEDLQVAGEAENGEEAVLLYQELQPDLVIMDITMPVKNGIEALKDMIQLNPKVKVIMC
TAMRQKRIVVEAIEAGAKDFIVKPFEETKVVEAIRHVLGNACR

Nucleotide


Download         Length: 372 bp        

>NTDB_id=815376 R0492_RS10300 WP_003182242.1 1991208..1991579(+) (spo0A) [Bacillus licheniformis strain NXU98]
ATGACAAGGGTTTTAATTGTTGATGATGCAAAATTTATGAGAGATAAAATTAGAGAAATACTTGAAACAGAAGACTTGCA
AGTCGCGGGTGAAGCCGAGAACGGGGAAGAAGCTGTTTTGCTTTATCAAGAGCTGCAGCCGGACTTGGTTATCATGGATA
TTACGATGCCTGTGAAAAACGGGATAGAAGCTTTAAAGGATATGATCCAGCTGAACCCGAAAGTGAAAGTGATCATGTGT
ACGGCCATGCGGCAAAAGCGGATCGTCGTTGAGGCGATCGAAGCCGGAGCCAAGGACTTCATCGTCAAGCCTTTCGAGGA
AACGAAAGTCGTCGAAGCGATTCGGCATGTGCTCGGAAATGCTTGCAGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

36.585

100

0.366
  pilH Synechocystis sp. PCC 6803

36.585

100

0.366