Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   P8596_RS08370 Genome accession   NZ_CP122397
Coordinates   1594090..1595058 (+) Length   322 a.a.
NCBI ID   WP_279726577.1    Uniprot ID   -
Organism   Rossellomorea sp. DA94     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1589090..1600058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8596_RS08345 (P8596_08345) - 1589145..1589324 (+) 180 WP_034763424.1 YjzC family protein -
  P8596_RS08350 (P8596_08350) clpB 1589446..1592037 (+) 2592 WP_279726573.1 ATP-dependent chaperone ClpB -
  P8596_RS08355 (P8596_08355) - 1592071..1592238 (-) 168 WP_263497663.1 YjzD family protein -
  P8596_RS08360 (P8596_08360) - 1592503..1593246 (+) 744 WP_224520461.1 hydrolase -
  P8596_RS08365 (P8596_08365) - 1593269..1593988 (+) 720 WP_279726575.1 hypothetical protein -
  P8596_RS08370 (P8596_08370) med 1594090..1595058 (+) 969 WP_279726577.1 BMP family ABC transporter substrate-binding protein Regulator
  P8596_RS08375 (P8596_08375) comZ 1595055..1595243 (+) 189 WP_034763435.1 ComZ family protein Regulator
  P8596_RS08380 (P8596_08380) - 1595461..1596393 (+) 933 WP_159361745.1 beta-ketoacyl-ACP synthase III -
  P8596_RS08385 (P8596_08385) fabF 1596445..1597689 (+) 1245 WP_224520457.1 beta-ketoacyl-ACP synthase II -
  P8596_RS08390 (P8596_08390) - 1597782..1598543 (+) 762 WP_279726579.1 DUF2268 domain-containing putative Zn-dependent protease -
  P8596_RS08395 (P8596_08395) - 1598680..1598889 (+) 210 WP_034763443.1 hypothetical protein -
  P8596_RS08400 (P8596_08400) - 1598985..1599734 (+) 750 WP_034763445.1 YjbA family protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 36044.17 Da        Isoelectric Point: 4.3904

>NTDB_id=815337 P8596_RS08370 WP_279726577.1 1594090..1595058(+) (med) [Rossellomorea sp. DA94]
MNKKWYMFYLIVFLVGLSGCSAGNSEEIEKVGLLVPEAVNDGVWGTKGYKGLLKIQSDYHADVFYKEGMKNDTSIKQAVE
EFDDKDVTLVFGHGSEYADVFNDLSEEHPNMHFVSFNGHATEKNTTSLQFKGYAMGFFGGMTAAFHSKTKKIGVIAAFEW
QPEVQGFIDGAKYQNSETEVNVEYTNHWDDQERALNELDTLLNEDIDVVYPAGDGYNVAVIEKLKEKGLYAIGYVSDQSD
LGESTVLTSTVQQADKLYAVVAERFAHDELESGNLEFDFEDGVISMGKFSPVIPKDFQSEMKQHIKDYIDTGKLPNGKES
KQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=815337 P8596_RS08370 WP_279726577.1 1594090..1595058(+) (med) [Rossellomorea sp. DA94]
ATGAATAAGAAATGGTACATGTTTTACCTGATTGTATTCCTGGTCGGACTAAGTGGTTGTTCAGCAGGGAACAGCGAAGA
GATAGAAAAGGTTGGTTTACTTGTTCCGGAAGCAGTGAATGATGGAGTTTGGGGAACAAAAGGTTACAAAGGATTACTAA
AAATACAATCCGATTATCATGCAGACGTGTTCTATAAAGAGGGAATGAAGAATGATACATCAATCAAGCAGGCAGTAGAG
GAATTTGATGATAAGGATGTCACCTTAGTATTTGGACATGGAAGTGAGTATGCGGATGTCTTTAACGACTTGTCAGAAGA
GCATCCCAATATGCATTTCGTCAGCTTTAACGGGCATGCCACGGAGAAAAATACGACAAGCCTACAGTTCAAGGGATACG
CAATGGGCTTTTTCGGAGGAATGACAGCAGCCTTTCACTCTAAAACGAAGAAGATCGGTGTGATTGCGGCCTTCGAGTGG
CAGCCGGAAGTTCAAGGGTTTATAGATGGAGCGAAGTATCAAAACAGTGAGACAGAGGTTAACGTAGAGTACACCAATCA
TTGGGACGATCAAGAGAGGGCCCTTAACGAGTTGGACACTTTACTAAACGAGGATATCGATGTTGTGTATCCTGCAGGTG
ACGGCTATAATGTAGCTGTAATCGAAAAGCTTAAGGAAAAAGGACTGTATGCCATAGGGTACGTATCCGATCAATCCGAT
CTTGGGGAATCAACGGTCCTGACAAGCACAGTTCAACAGGCAGATAAGTTGTATGCAGTAGTAGCCGAGAGGTTCGCCCA
TGATGAGCTGGAGTCAGGTAACCTGGAATTCGATTTTGAAGACGGTGTGATCTCCATGGGGAAATTCAGTCCAGTCATTC
CAAAAGATTTTCAATCTGAAATGAAGCAACATATCAAGGACTATATTGATACCGGCAAATTGCCGAATGGAAAGGAATCG
AAGCAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

55.38

98.137

0.543