Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R0513_RS05550 Genome accession   NZ_CP136638
Coordinates   1047508..1048056 (+) Length   182 a.a.
NCBI ID   WP_002869474.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S2-20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1042508..1053056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0513_RS05515 (R0513_05515) - 1042699..1043124 (+) 426 WP_002869469.1 GNAT family N-acetyltransferase -
  R0513_RS05520 (R0513_05520) - 1043188..1043807 (+) 620 Protein_1070 NAD(P)H-dependent oxidoreductase -
  R0513_RS05525 (R0513_05525) - 1043807..1044412 (+) 606 WP_002869471.1 NAD(P)H-dependent oxidoreductase -
  R0513_RS05530 (R0513_05530) pgsA 1044537..1045073 (+) 537 WP_002869472.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R0513_RS05535 (R0513_05535) rseP 1045070..1046176 (+) 1107 WP_002869473.1 RIP metalloprotease RseP -
  R0513_RS05540 (R0513_05540) - 1046169..1047035 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  R0513_RS05545 (R0513_05545) rpsF 1047122..1047499 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R0513_RS05550 (R0513_05550) ssb 1047508..1048056 (+) 549 WP_002869474.1 single-stranded DNA-binding protein Machinery gene
  R0513_RS05555 (R0513_05555) rpsR 1048067..1048327 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R0513_RS05560 (R0513_05560) lon 1048387..1050762 (-) 2376 WP_002852988.1 endopeptidase La -
  R0513_RS05565 (R0513_05565) - 1050779..1051426 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R0513_RS05570 (R0513_05570) fliW 1051587..1051976 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R0513_RS05575 (R0513_05575) proC 1051976..1052707 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  R0513_RS05580 (R0513_05580) ctsT 1052704..1053006 (+) 303 WP_002875928.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20569.47 Da        Isoelectric Point: 5.0431

>NTDB_id=815274 R0513_RS05550 WP_002869474.1 1047508..1048056(+) (ssb) [Campylobacter jejuni strain S2-20]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=815274 R0513_RS05550 WP_002869474.1 1047508..1048056(+) (ssb) [Campylobacter jejuni strain S2-20]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.068

96.703

0.368
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363