Detailed information NTG0815112

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: RZE83_RS19825
• Genome accession: NZ_CP136588
• Coordinates: 4061078..4062349 (+)
• Length: 423 a.a.
• NCBI ID: WP_014494834.1
• Uniprot ID: A0ABY7MCD4
• Organism: Bradyrhizobium japonicum strain CNPSo 17
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4056078..4067349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RZE83_RS19800 (RZE83_19800)	-	4056092..4056526 (+)	435	WP_039147866.1	GNAT family N-acetyltransferase	-
RZE83_RS19805 (RZE83_19805)	-	4056554..4057906 (-)	1353	WP_039147868.1	multicopper oxidase family protein	-
RZE83_RS19815 (RZE83_19815)	tig	4058319..4059680 (+)	1362	WP_014494832.1	trigger factor	-
RZE83_RS19820 (RZE83_19820)	clpP	4059984..4060616 (+)	633	WP_014494833.1	ATP-dependent Clp protease proteolytic subunit	Regulator
RZE83_RS19825 (RZE83_19825)	clpX	4061078..4062349 (+)	1272	WP_014494834.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
RZE83_RS19830 (RZE83_19830)	lon	4062674..4065097 (+)	2424	WP_014494835.1	endopeptidase La	-
RZE83_RS19835 (RZE83_19835)	-	4065167..4065570 (+)	404	Protein_3944	GFA family protein	-
RZE83_RS19845 (RZE83_19845)	-	4065974..4066165 (+)	192	WP_014494837.1	hypothetical protein	-
RZE83_RS19850 (RZE83_19850)	-	4066345..4067205 (+)	861	WP_039147870.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46576.40 Da
• Isoelectric Point: 5.5461

>NTDB_id=815112 RZE83_RS19825 WP_014494834.1 4061078..4062349(+) (clpX) [Bradyrhizobium japonicum strain CNPSo 17]
MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSRDGIPTPKEICKVLDDYVIGQ
SHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENI
ILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT
NILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDETSLK
KILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILEAILLETMFDLPGLEGVEEVVISREVV
EGTARPLYIYADRSDRAVENASA

Nucleotide

• Length: 1272 bp

>NTDB_id=815112 RZE83_RS19825 WP_014494834.1 4061078..4062349(+) (clpX) [Bradyrhizobium japonicum strain CNPSo 17]
ATGAGTAAGGTCGGCACGAGCGACTCCAAGAACACGCTGTATTGCTCGTTCTGCGGCAAGAGCCAGCACGAAGTCCGCAA
ACTGATCGCGGGTCCCACGGTCTTCATCTGCGACGAGTGCGTTGAGCTCTGCATGGACATCATCCGCGAGGAGAACAAAT
CCTCGCTCGTGAAGTCGCGCGACGGCATTCCGACGCCGAAGGAAATCTGCAAGGTCCTGGACGATTACGTCATCGGCCAG
AGCCATGCGAAGAAGGTCCTGTCGGTCGCGGTGCACAATCACTACAAGCGTCTCAACCACCAGACCAAGCACAACGACGT
CGAGCTCGCGAAGTCGAACATCCTGCTGATCGGTCCGACCGGTTCGGGCAAGACGCTGCTCGCGCAGACGCTCGCCCGCA
TCCTGGACGTGCCGTTCACGATGGCCGATGCGACGACCCTGACCGAAGCCGGCTATGTCGGCGAGGACGTCGAGAACATC
ATCCTGAAGCTGCTGCAGGCCGCCGACTACAATGTCGAGCGCGCCCAGCGCGGCATCGTCTACATCGACGAAATCGACAA
GATCAGCCGCAAGTCCGACAATCCCTCAATCACGCGCGACGTGTCGGGTGAGGGCGTGCAGCAGGCGTTGCTGAAGATCA
TGGAAGGCACGGTGGCTTCGGTCCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTGGATACCACC
AACATCCTGTTCATCTGCGGCGGTGCGTTCGCCGGCCTCGAGAAGATCATCTCGGCGCGCGGGCGGTCGACCTCGATCGG
TTTCGCCGCCCAGGTGCTGGCGCCGGAGGATCGCCGTACCGGCGAGATCTTCCGTCACGTCGAGCCTGAGGACCTCCTGA
AGTACGGTCTCATCCCCGAATTCGTCGGCCGTCTGCCGGTCGTGGCGACGCTCGAGGATCTGGACGAGACCTCGCTGAAG
AAGATCCTCACCGAGCCGAAGAACGCGCTGGTGAAACAGTACCAGCGGCTGTTCGAGATGGAGAACATCGAGCTGACCTT
CGCCGACGAGGCGCTTGGCGCGGTCGCCCGCAAGGCGATCGAGCGCAAGACCGGCGCGCGTGGTCTGCGTTCGATCCTCG
AGGCGATCCTGCTCGAGACCATGTTCGACCTGCCGGGCCTGGAAGGTGTGGAAGAAGTCGTGATTTCGCGCGAAGTCGTG
GAAGGCACGGCCCGTCCGCTCTACATCTACGCTGATCGGTCCGATCGCGCCGTCGAGAACGCCAGCGCCTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (314-385)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.728	95.745	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.745	0.527