Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RZV12_RS19245 Genome accession   NZ_CP136552
Coordinates   3904006..3904743 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O104:H4 strain rpoS_ATGtoATA     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3899006..3909743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV12_RS19230 clpC 3899460..3902033 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  RZV12_RS19235 yfiH 3902163..3902894 (-) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  RZV12_RS19240 rluD 3902891..3903871 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RZV12_RS19245 comL 3904006..3904743 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RZV12_RS19250 raiA 3905014..3905355 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RZV12_RS19255 pheL 3905459..3905506 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RZV12_RS19260 pheA 3905605..3906765 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  RZV12_RS19265 tyrA 3906808..3907929 (-) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RZV12_RS19270 aroF 3907940..3909010 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RZV12_RS19275 yfiL 3909220..3909585 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=815058 RZV12_RS19245 WP_000197686.1 3904006..3904743(+) (comL) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=815058 RZV12_RS19245 WP_000197686.1 3904006..3904743(+) (comL) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376