Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QA442_RS09580 Genome accession   NZ_CP121861
Coordinates   1823718..1825448 (+) Length   576 a.a.
NCBI ID   WP_095431668.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1818718..1830448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS09555 (QA442_09555) - 1819082..1819336 (+) 255 WP_095431671.1 exodeoxyribonuclease VII small subunit -
  QA442_RS09560 (QA442_09560) - 1819326..1820216 (+) 891 WP_095431670.1 polyprenyl synthetase family protein -
  QA442_RS09565 (QA442_09565) dxs 1820392..1822293 (+) 1902 WP_069839471.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QA442_RS09570 (QA442_09570) - 1822290..1823135 (+) 846 WP_095431669.1 TlyA family RNA methyltransferase -
  QA442_RS09575 (QA442_09575) argR 1823232..1823681 (+) 450 WP_003230265.1 arginine repressor ArgR -
  QA442_RS09580 (QA442_09580) recN 1823718..1825448 (+) 1731 WP_095431668.1 DNA repair protein RecN Machinery gene
  QA442_RS09585 (QA442_09585) spoIVB 1825623..1826903 (+) 1281 WP_069149849.1 SpoIVB peptidase -
  QA442_RS09590 (QA442_09590) spo0A 1827179..1827982 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  QA442_RS09595 (QA442_09595) - 1828128..1828307 (+) 180 WP_014664554.1 hypothetical protein -
  QA442_RS09600 (QA442_09600) - 1828523..1829641 (-) 1119 WP_095431667.1 NADH-dependent flavin oxidoreductase -
  QA442_RS09605 (QA442_09605) - 1829714..1829866 (-) 153 WP_141237718.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64630.48 Da        Isoelectric Point: 4.7691

>NTDB_id=814910 QA442_RS09580 WP_095431668.1 1823718..1825448(+) (recN) [Bacillus stercoris strain Mal05]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIIMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYHRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLEINEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QSGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKI
RQASRNEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKIVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=814910 QA442_RS09580 WP_095431668.1 1823718..1825448(+) (recN) [Bacillus stercoris strain Mal05]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCGATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTTTTGGAGAGCGGCCATCCCGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCATCATGAGAAGAGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTCTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGCGCGCTCCAA
GCGTATCAGGAAGGGTACCATCGGTATATGAAGCTGCTCAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGCCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCAGCGAAGCTTGAGATCAACGAAGATGAACAGCTTC
AAGAAGAGCGTCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAATGCGCTTCGCAGTGAA
CAGAGCGGATTGGACTGGGTCGGAATGGCATCAGCCCAGCTTGAAGATATATCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAGAGTGTTTCGAACTCCTACTATCTGCTTGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGATCCAGAACGCCTGAACTATATTGAGACGCGGCTCAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTC
GAGGACATTTTGGAATACGCTTCTAAAATTGAAGAAGAAATTGACCAAATTGAAAACAGGGACAGCCACCTCCAAAGTCT
GAAAAAGGAGCTTGACTCCGTTGGCAAGGATGTCGCAGTGGAAGCGGCAAATGTTTCTCAAATCCGGAAAACATGGGCGA
AAAAACTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACGTTTGATACGGAATTCAAAATC
AGACAAGCGTCACGCAATGAAGAGGCACCGGTTGTAAACGGCCAGCCTGTTCAGCTGACTGAACAAGGGATCGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCTCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAGCAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTTTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTTTCTAAGCAGGAAAAAATAGTGGAAATCGGACGCATGATTGCAGGTGTCGAGGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.569

100

0.976