Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QA442_RS08885 Genome accession   NZ_CP121861
Coordinates   1704621..1705238 (+) Length   205 a.a.
NCBI ID   WP_095431722.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1699621..1710238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS08850 (QA442_08850) aroE 1700279..1701121 (+) 843 WP_095431726.1 shikimate dehydrogenase -
  QA442_RS08855 (QA442_08855) yhbY 1701115..1701405 (+) 291 WP_095431725.1 ribosome assembly RNA-binding protein YhbY -
  QA442_RS08860 (QA442_08860) - 1701417..1701986 (+) 570 WP_014664673.1 nicotinate-nucleotide adenylyltransferase -
  QA442_RS08865 (QA442_08865) yqeK 1701976..1702536 (+) 561 WP_069149899.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QA442_RS08870 (QA442_08870) rsfS 1702554..1702910 (+) 357 WP_014664671.1 ribosome silencing factor -
  QA442_RS08875 (QA442_08875) - 1702907..1703650 (+) 744 WP_095431724.1 class I SAM-dependent methyltransferase -
  QA442_RS08880 (QA442_08880) comER 1703716..1704537 (-) 822 WP_095431723.1 late competence protein ComER -
  QA442_RS08885 (QA442_08885) comEA 1704621..1705238 (+) 618 WP_095431722.1 helix-hairpin-helix domain-containing protein Machinery gene
  QA442_RS08890 (QA442_08890) - 1705305..1705874 (+) 570 Protein_1715 ComE operon protein 2 -
  QA442_RS08895 (QA442_08895) comEC 1705878..1708208 (+) 2331 WP_095431721.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QA442_RS08900 (QA442_08900) - 1708249..1708383 (-) 135 WP_003229983.1 YqzM family protein -
  QA442_RS08905 (QA442_08905) - 1708460..1708573 (+) 114 WP_134975484.1 hypothetical protein -
  QA442_RS08910 (QA442_08910) holA 1708613..1709656 (+) 1044 WP_095431720.1 DNA polymerase III subunit delta -
  QA442_RS08915 (QA442_08915) rpsT 1709671..1709937 (-) 267 WP_003229989.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21712.47 Da        Isoelectric Point: 4.8417

>NTDB_id=814898 QA442_RS08885 WP_095431722.1 1704621..1705238(+) (comEA) [Bacillus stercoris strain Mal05]
MNWLNQHKKAMILAASVAVFTAIMIFLASGRNKEPVKQAVPTETVNTEVKQEAGKDESSEAIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTNEQADEVQVNLAEILQDGTVVYIPKKGEETAGQQGAGGAVQSGGGKGELVNINTATVEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSISVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=814898 QA442_RS08885 WP_095431722.1 1704621..1705238(+) (comEA) [Bacillus stercoris strain Mal05]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATGATTTTAGCGGCTTCTGTAGCTGTTTTCACAGCAATTATGATCTTTCT
AGCCAGCGGGAGAAACAAAGAGCCGGTGAAGCAGGCTGTACCAACTGAGACGGTAAATACGGAGGTAAAGCAGGAAGCAG
GCAAAGATGAGTCAAGCGAAGCAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCAGGCGGAACCAATGAGCAAGCAGATGAAGTGCAAGTGAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAAGGGGAGGAAACAGCAGGGCAACAGGGTGCCGGAGGAGCTG
TCCAAAGCGGTGGAGGGAAGGGGGAGCTGGTAAATATCAATACAGCCACCGTAGAGGAGTTACAAGGTATCTCAGGGGTT
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAGGAAAATGGGCGTTTCCAGACTATTGAAGATATCACGAAGGT
TTCAGGAATAGGCGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTTCAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(141-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

90.732

100

0.907
  comEA Staphylococcus aureus MW2

36.967

100

0.38